Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0604
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 113 5e-26
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 109 1e-24
06_03_0159 - 17358853-17360781 29 1.1
02_03_0120 + 15463163-15465250 29 2.0
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001... 28 2.6
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 28 2.6
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 28 3.5
06_01_0612 - 4429605-4431152 27 4.6
11_04_0377 + 16977586-16977843 27 6.0
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 27 6.0
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821... 27 8.0
05_03_0637 - 16465433-16466242 27 8.0
02_04_0088 + 19633641-19634228 27 8.0
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 113 bits (272), Expect = 5e-26
Identities = 48/82 (58%), Positives = 67/82 (81%)
Frame = +2
Query: 167 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 346
SA +LKS LQE IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD
Sbjct: 34 SASDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMTGMLWETSLLD 93
Query: 347 ADEGIRFRGLSIPECQQQLPKA 412
DEGIRFRGLSIPECQ+ LP A
Sbjct: 94 PDEGIRFRGLSIPECQKVLPTA 115
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 109 bits (261), Expect = 1e-24
Identities = 46/82 (56%), Positives = 66/82 (80%)
Frame = +2
Query: 167 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 346
S +LKS LQE IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD
Sbjct: 34 SPSDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMIGMLWETSLLD 93
Query: 347 ADEGIRFRGLSIPECQQQLPKA 412
+EGIRFRGLSIPECQ+ LP A
Sbjct: 94 PEEGIRFRGLSIPECQKVLPTA 115
>06_03_0159 - 17358853-17360781
Length = 642
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 270 PTLVEPCFFRNSRIFSCSLG--IFSWRILFKFVCSALRPR 157
P L+ P F R+ R F L + S+ +L K VCS+L PR
Sbjct: 144 PHLLPPFFSRSLRRFPGRLAPTLLSFNLLLKCVCSSLVPR 183
>02_03_0120 + 15463163-15465250
Length = 695
Score = 28.7 bits (61), Expect = 2.0
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -3
Query: 414 LALGSCCWHSGMDRPRKRIPSSASSTEVSQTRPLI---PRMPPYIISTVTSPTLVEPCFF 244
L +G CC H RKR + + T PLI +MPP ++ V + + +
Sbjct: 630 LLVGLCCVHPDC---RKRPGMRRVVSMLDGTAPLILVPDKMPPVLLQPVPNASSMNSADT 686
Query: 243 RNSRIFSC 220
N+ FSC
Sbjct: 687 ANTAFFSC 694
>07_03_0535 -
19198130-19198139,19199901-19199995,19200095-19200154,
19200241-19200349,19200438-19200604,19200694-19200813,
19200901-19200987,19201068-19201196,19201284-19201362,
19201451-19201530,19201646-19201726,19201812-19201874,
19201963-19202139,19202381-19202476,19202610-19202729,
19202825-19202933,19203016-19203235,19203320-19203405,
19203491-19203552,19203649-19203685,19203790-19203848,
19203952-19204037,19204142-19204313
Length = 767
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 360 IPSSASSTEVSQTRPLIPRMPPYIISTVTSPT 265
+PS+A S +V+ + P I R PP + + T PT
Sbjct: 162 VPSNAKSADVASSTPKIQRPPP-VKAVTTVPT 192
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 28.3 bits (60), Expect = 2.6
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -3
Query: 381 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 253
MDR R+R P S S S P PR P + V P L EP
Sbjct: 1 MDRLRRRNPKSVPSGSSSMKPPRPPRGPSFQAPAVPRP-LPEP 42
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 385 RDG*TTETDSFIGIQHRGFPNQTFDSTHATVHH 287
+DG D IG++ + FP + D T A HH
Sbjct: 407 KDGELDSKDLDIGLKRKPFPRKMEDPTSADAHH 439
>06_01_0612 - 4429605-4431152
Length = 515
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 369 RKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPT-LVEPCFFR 241
R+R+P S S V+ P P++PP + ST P+ + P F R
Sbjct: 74 RRRLPPSPSVRVVAIPFPAHPQIPPGVESTDALPSQSLFPAFLR 117
>11_04_0377 + 16977586-16977843
Length = 85
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +2
Query: 188 KSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGL 322
K+IL+++I ++ E R+K+ ++ + D+M G + L
Sbjct: 6 KTILEQQIAAATARLEELRRKNRELEIKLIVCDLMSGRRNNVDDL 50
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 372 PRKRIPSSASSTEVSQTRPLIPRMP 298
PR+ P++AS+ VS + L+PR P
Sbjct: 306 PRRSSPAAASAPPVSASSALLPRRP 330
>06_01_1195 +
10280864-10280979,10281024-10281115,10281211-10282156,
10282378-10283075,10283140-10284068
Length = 926
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 155 LRGLSAEQT-NLKSILQEKIPKEQEKIREFRKKHGST 262
+R L QT NLK L K+P E ++R FR ST
Sbjct: 570 IRKLQGLQTLNLKRSLITKVPAEVTELRSFRSLRCST 606
>05_03_0637 - 16465433-16466242
Length = 269
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 354 SSASSTEVSQTRPLIPRMPPYI 289
S+ASST RPL+PR PP++
Sbjct: 128 SAASSTSAPPLRPLLPR-PPHL 148
>02_04_0088 + 19633641-19634228
Length = 195
Score = 26.6 bits (56), Expect = 8.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 215 KEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 346
+E+E RE K+H + G V + M+G R +K V + +V D
Sbjct: 110 EERESARERLKRHRTEMAGRVRIPEMWGQERLLKDWV-DCAVFD 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,100,885
Number of Sequences: 37544
Number of extensions: 246015
Number of successful extensions: 860
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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