Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0604
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   4.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.4  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 219 SLGIFSWRILFK 184
           SLGI +W++LF+
Sbjct: 239 SLGIVAWQMLFR 250


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -2

Query: 322 QTFDSTHATVH-HINCDLSDF 263
           +T  S+H  +  HINCD S F
Sbjct: 52  KTLISSHDELPGHINCDSSKF 72



 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 138 GHAFCNSTSLEDVILNR 88
           GH  C+S+  E+ ++N+
Sbjct: 63  GHINCDSSKFEEDLMNK 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,836
Number of Sequences: 438
Number of extensions: 2422
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)