Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0600
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    28   1.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   4.6  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.0  

>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 435 KITLKPKPDIQFLKLK*RLDSKRHIFTNNNR 343
           ++T   K DIQ LK++  LD KRH    N +
Sbjct: 122 ELTESVKRDIQLLKMRNALDPKRHYRRENTK 152


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 480  NFDKLVSFFAIGMVFKITLKPKPD 409
            N+ + VSF AIG VF++ L  K D
Sbjct: 2210 NWSEPVSFDAIGSVFEVELPSKED 2233


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 181 INSPLQLQTHSVMRKRILTMSLNRLGNTNIHISNIS 288
           I SPL L T S++    +  + N   NT+I  SN++
Sbjct: 386 ITSPLCLNTSSIVFNATVNFTRNGKFNTSIFSSNLN 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,407
Number of Sequences: 5004
Number of extensions: 35432
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)