Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0600
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)            29   2.1  
SB_50133| Best HMM Match : Ank (HMM E-Value=0)                         28   6.3  
SB_3423| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.4  
SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)              27   8.4  

>SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)
          Length = 469

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 489 TVHNFDKLVSFFAIGMVFKITLKPKPDIQFLKL 391
           ++H+   L  F A G  F+++LKPK D+   KL
Sbjct: 65  SIHSSRTLHEFRAFGKYFELSLKPKEDVASSKL 97


>SB_50133| Best HMM Match : Ank (HMM E-Value=0)
          Length = 551

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 142 NATPDCEIDP*YFINSPLQLQTHSVMRKRILTMSLNRLGNTNIHIS 279
           N TP  E         P  L T+ +++ R+   ++++LGNT +H++
Sbjct: 497 NRTPTDEHYTKDICRYPCLLTTNLLLKNRVHVNTIDKLGNTPLHVA 542


>SB_3423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 105 VNFLTTLKEFIDKCYSRLRNRSLIFHKLASATSN 206
           ++F   + +   KCY+++ NR+L  H+L     N
Sbjct: 435 IDFARRIDQMKPKCYTQIFNRNLTIHRLCVKRCN 468


>SB_28947| Best HMM Match : Sugar_tr (HMM E-Value=2.1e-06)
          Length = 624

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 377 IQNDIFLLTITGCLVLIHAYGQR*PIVVVMLILEICILVLPSLF 246
           I N I++  +  C  L+H YG+R P    ML      L++ ++F
Sbjct: 297 IMNSIYIPHLFFCWFLMHRYGRRFPYSSYMLSAGAASLLILAVF 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,929,698
Number of Sequences: 59808
Number of extensions: 233220
Number of successful extensions: 378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)