Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0599
(545 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 222 4e-57
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 221 6e-57
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 137 3e-51
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 196 2e-49
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 171 1e-41
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 163 3e-39
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 162 5e-39
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 161 1e-38
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 151 8e-36
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 112 2e-34
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 136 2e-31
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 107 2e-22
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 82 9e-15
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 81 2e-14
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 80 3e-14
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 78 1e-13
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 77 2e-13
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 77 3e-13
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 77 4e-13
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 76 5e-13
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 72 8e-12
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 70 4e-11
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 69 5e-11
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 68 1e-10
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 66 5e-10
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 65 1e-09
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 62 6e-09
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 60 4e-08
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 60 4e-08
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 57 2e-07
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 56 4e-07
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 53 5e-06
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 51 2e-05
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.050
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 37 0.26
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 35 1.4
UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 32 7.5
UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precurs... 32 7.5
UniRef50_Q5FHB1 Cluster: High-affinity zinc uptake system protei... 32 9.9
UniRef50_A3SDJ8 Cluster: Putative LysR-family protein transcript... 32 9.9
UniRef50_Q22BQ8 Cluster: Putative uncharacterized protein; n=1; ... 32 9.9
UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative; ... 32 9.9
UniRef50_Q9YA06 Cluster: Putative uncharacterized protein; n=1; ... 32 9.9
UniRef50_Q4PE27 Cluster: Palmitoyltransferase PFA4; n=1; Ustilag... 32 9.9
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 222 bits (543), Expect = 4e-57
Identities = 105/159 (66%), Positives = 119/159 (74%)
Frame = +3
Query: 69 PKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 248
PKH L P PL+IFLRNRLKYALTG+EV KI QR IK+DG
Sbjct: 15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDG 74
Query: 249 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 428
KVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K
Sbjct: 75 KVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTK 134
Query: 429 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 545
+P+LVTHD RTIRYPDPLIKVND+IQ+D+ T KI DFI
Sbjct: 135 GIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFI 173
Score = 88.6 bits (210), Expect = 8e-17
Identities = 38/43 (88%), Positives = 40/43 (93%)
Frame = +2
Query: 26 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLP
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLP 43
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 221 bits (541), Expect = 6e-57
Identities = 101/139 (72%), Positives = 116/139 (83%)
Frame = +3
Query: 129 PTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 308
P + PL+IFLRNRLKYAL G EV KIV QRL+KVDGKVRTDPTYPAG+MDV+++EK
Sbjct: 35 PHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEK 94
Query: 309 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 488
T E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYPDPLI
Sbjct: 95 TGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLI 154
Query: 489 KVNDSIQLDIATTKIMDFI 545
NDS+Q+DIA+ KI D+I
Sbjct: 155 HANDSVQVDIASGKITDYI 173
Score = 91.5 bits (217), Expect = 1e-17
Identities = 40/43 (93%), Positives = 41/43 (95%)
Frame = +2
Query: 26 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LP
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLP 43
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 137 bits (331), Expect(2) = 3e-51
Identities = 68/106 (64%), Positives = 74/106 (69%)
Frame = +3
Query: 69 PKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 248
PKH L P PL+IFLRNRLKYALTG+EV KI QR IK+DG
Sbjct: 15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDG 74
Query: 249 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 386
KVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 75 KVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 87.4 bits (207), Expect(2) = 3e-51
Identities = 36/54 (66%), Positives = 46/54 (85%)
Frame = +3
Query: 384 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 545
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFI
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFI 205
Score = 86.6 bits (205), Expect = 3e-16
Identities = 37/42 (88%), Positives = 39/42 (92%)
Frame = +2
Query: 29 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLP
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLP 43
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 196 bits (479), Expect = 2e-49
Identities = 95/159 (59%), Positives = 112/159 (70%)
Frame = +3
Query: 69 PKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 248
PKH L P PLV+ +RNRLKYALT EV+ I+ QR I+VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDG 74
Query: 249 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 428
KVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K
Sbjct: 75 KVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQK 134
Query: 429 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 545
+PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FI
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFI 173
Score = 85.4 bits (202), Expect = 8e-16
Identities = 36/43 (83%), Positives = 39/43 (90%)
Frame = +2
Query: 26 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLP
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLP 43
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 171 bits (415), Expect = 1e-41
Identities = 76/139 (54%), Positives = 101/139 (72%)
Frame = +3
Query: 129 PTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 308
P PL++ LRNRL YAL G EV IVK R IK+DGK+RTD YP GFMDV+SI +
Sbjct: 35 PHGMKECLPLILILRNRLNYALNGREVTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPR 94
Query: 309 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 488
T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRYP P +
Sbjct: 95 TKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPEL 154
Query: 489 KVNDSIQLDIATTKIMDFI 545
+ ND+I+L++ T KI+DF+
Sbjct: 155 QANDTIKLNLETGKIVDFV 173
Score = 77.4 bits (182), Expect = 2e-13
Identities = 31/43 (72%), Positives = 36/43 (83%)
Frame = +2
Query: 26 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLP
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLP 43
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 163 bits (395), Expect = 3e-39
Identities = 76/139 (54%), Positives = 101/139 (72%)
Frame = +3
Query: 129 PTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 308
P ++ PLVI +RN+LKY+ E L I+K+ I VDGKVR D +PAG MDV+SI+
Sbjct: 35 PHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNEIYVDGKVRADKNFPAGVMDVISIKT 94
Query: 309 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 488
T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+ LI
Sbjct: 95 TKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLI 154
Query: 489 KVNDSIQLDIATTKIMDFI 545
K NDSI LD+ K++DFI
Sbjct: 155 KSNDSIVLDLLNNKVIDFI 173
Score = 69.7 bits (163), Expect = 4e-11
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +2
Query: 26 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +P
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIP 43
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 162 bits (393), Expect = 5e-39
Identities = 76/124 (61%), Positives = 93/124 (75%)
Frame = +3
Query: 162 IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDV 341
IFLRNRLKYALTG+EV KI Q IKVDGK+RTD P MDV+SI+K E F LIY +
Sbjct: 56 IFLRNRLKYALTGDEVKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGI 115
Query: 342 KGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA 521
RF +HRITPEE KYKLCK++++ K +P+LV HD T+R+PD LIKVND+IQ+D+
Sbjct: 116 NRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLE 175
Query: 522 TTKI 533
T KI
Sbjct: 176 TGKI 179
Score = 73.7 bits (173), Expect = 2e-12
Identities = 32/46 (69%), Positives = 39/46 (84%)
Frame = +2
Query: 17 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP 54
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 161 bits (390), Expect = 1e-38
Identities = 72/139 (51%), Positives = 99/139 (71%)
Frame = +3
Query: 129 PTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 308
P P+ IFLR+RLKYALT E + IVK+RL+KVDGKVRT+ YP G MDV+ + K
Sbjct: 49 PHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGK 108
Query: 309 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 488
+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y DP +
Sbjct: 109 SNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSV 168
Query: 489 KVNDSIQLDIATTKIMDFI 545
+V+D+++ +I T ++ I
Sbjct: 169 RVHDALKFNIKTGEVESVI 187
Score = 62.1 bits (144), Expect = 8e-09
Identities = 28/47 (59%), Positives = 31/47 (65%)
Frame = +2
Query: 26 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPXGDF 166
M R + HLKRL AP W+L K G +A PSTGPHKLRECLP F
Sbjct: 15 MPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIF 61
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 151 bits (367), Expect = 8e-36
Identities = 70/140 (50%), Positives = 95/140 (67%), Gaps = 2/140 (1%)
Frame = +3
Query: 129 PTSCASACPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMDVVSI 302
P + PL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G MDVV I
Sbjct: 145 PHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRI 204
Query: 303 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 482
EKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+P
Sbjct: 205 EKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNP 264
Query: 483 LIKVNDSIQLDIATTKIMDF 542
IK+ D+++ D+ KI +F
Sbjct: 265 EIKIGDTLKYDLVNNKIENF 284
Score = 54.8 bits (126), Expect = 1e-06
Identities = 21/26 (80%), Positives = 26/26 (100%)
Frame = +2
Query: 29 ARGPKKHLKRLNAPKAWMLDKLGGVY 106
ARGPKKHLKR+NAPK+WML+KLGG++
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIW 108
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 112 bits (269), Expect(2) = 2e-34
Identities = 48/69 (69%), Positives = 58/69 (84%)
Frame = +3
Query: 336 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 515
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 516 IATTKIMDF 542
+ T KI DF
Sbjct: 136 LETGKITDF 144
Score = 79.0 bits (186), Expect = 7e-14
Identities = 33/43 (76%), Positives = 36/43 (83%)
Frame = +2
Query: 26 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLP
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLP 43
Score = 56.0 bits (129), Expect(2) = 2e-34
Identities = 30/61 (49%), Positives = 33/61 (54%)
Frame = +3
Query: 69 PKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 248
PKH L P PL+IFLRNRLKYALTG+EV KI Q IK+DG
Sbjct: 15 PKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQHFIKMDG 74
Query: 249 K 251
K
Sbjct: 75 K 75
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 136 bits (330), Expect = 2e-31
Identities = 67/142 (47%), Positives = 86/142 (60%)
Frame = +3
Query: 120 QPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 299
+P P PL++ +RNRLKYAL E I++Q L+ VD R D YPAGFMDVV
Sbjct: 29 RPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQGLVHVDNHPRRDGKYPAGFMDVVE 88
Query: 300 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 479
I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYPD
Sbjct: 89 IPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPD 148
Query: 480 PLIKVNDSIQLDIATTKIMDFI 545
P + D+I ++ K +D I
Sbjct: 149 PHTSIGDTIVYNVKEKKCVDLI 170
Score = 72.1 bits (169), Expect = 8e-12
Identities = 31/38 (81%), Positives = 32/38 (84%)
Frame = +2
Query: 41 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
KKHLKRL APK WML KL GV+APRP GPHKLRECLP
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLP 40
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 107 bits (257), Expect = 2e-22
Identities = 54/139 (38%), Positives = 87/139 (62%)
Frame = +3
Query: 129 PTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 308
P PL + L+YA E+ I+ ++ IKV+G+VRT+ +P G DVVSIEK
Sbjct: 35 PHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEK 94
Query: 309 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 488
T E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+ DP I
Sbjct: 95 TGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPAI 153
Query: 489 KVNDSIQLDIATTKIMDFI 545
+ +I++ T+K++++I
Sbjct: 154 DLGYTIKISNETSKVIEYI 172
Score = 64.1 bits (149), Expect = 2e-09
Identities = 26/45 (57%), Positives = 32/45 (71%)
Frame = +2
Query: 26 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPXG 160
M G + HLKR APK+WMLDK GG +A P++GPHK EC+P G
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLG 45
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 81.8 bits (193), Expect = 9e-15
Identities = 49/130 (37%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Frame = +3
Query: 120 QPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 299
+P P + PL++ +RN L YA T E K++ + +VDG VR D +P GFMDV+
Sbjct: 33 RPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIE 92
Query: 300 IEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI--R 470
+ T E FR++ Y VK F +H I EE K +++ T L HDGR I R
Sbjct: 93 VVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVR 151
Query: 471 YPDPLIKVND 500
DP V D
Sbjct: 152 VKDPRNPVED 161
Score = 33.1 bits (72), Expect = 4.3
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 26 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
MAR G ++ LK L AP+ W + + +A +P GPH + LP
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLP 44
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 81.0 bits (191), Expect = 2e-14
Identities = 43/115 (37%), Positives = 62/115 (53%)
Frame = +3
Query: 123 PVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 302
P P S S+ P+ I LR+ YA T E +I+ R+I+VDG+V TD +P G MDV+ I
Sbjct: 36 PGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASRVIEVDGRVVTDYKFPVGLMDVLHI 95
Query: 303 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 467
+ +R++ D + I PEEA YKL +++R T HDGR +
Sbjct: 96 IPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNV 150
Score = 39.1 bits (87), Expect = 0.066
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 17 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPXG 160
+ +G +HL+R AP W + + V+ +PS GPH L +P G
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIG 48
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 80.2 bits (189), Expect = 3e-14
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Frame = +3
Query: 123 PVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 302
P P S A + PL + +R+ LKYA T +E I+ + +KVDG VR D +P G MDV+ I
Sbjct: 29 PGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEI 88
Query: 303 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR---TIRY 473
T E++R++ D + + I+ EEA KL +V+ L HDGR T
Sbjct: 89 VPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLE 148
Query: 474 PDPLIKVNDSIQLDIATTKI 533
IK DS+ D+ I
Sbjct: 149 AGKQIKTFDSVLYDLRNKAI 168
Score = 39.1 bits (87), Expect = 0.066
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 47 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLP 154
HL+R AP W + K GGV+ RPS GPH L LP
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLP 39
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 78.2 bits (184), Expect = 1e-13
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Frame = +3
Query: 123 PVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 302
P P + ++ PL+I +R+ L YA E KI+ + I VDG VR +P +P G MDVV I
Sbjct: 37 PGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEI 96
Query: 303 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRYP 476
+T + +R++ + R + I+ EEA+ K+C++K + HDG+ +
Sbjct: 97 PRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIE 156
Query: 477 DP------LIKVNDSIQLDI 518
DP + V DS+ L++
Sbjct: 157 DPTDPKEDVYSVGDSLVLEL 176
Score = 50.0 bits (114), Expect = 4e-05
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 35 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLP 154
GPK+H+KRL AP AW + K GG +APRP GPH + +P
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVP 47
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 77.4 bits (182), Expect = 2e-13
Identities = 43/133 (32%), Positives = 70/133 (52%)
Frame = +3
Query: 135 SCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTN 314
S ++ L + +R+ LK A E +I+ + VDG+V D +P GFMD++ I KT
Sbjct: 38 SIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTG 97
Query: 315 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 494
E++R++ D KGR +++I EE KLCK+ +T + HDG+ + + V
Sbjct: 98 EVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNV 155
Query: 495 NDSIQLDIATTKI 533
D I L + +I
Sbjct: 156 GDVIDLKVPDHEI 168
Score = 35.5 bits (78), Expect = 0.81
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 35 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECL 151
G +KHLK APK W + + +PS G H + L
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSL 43
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 77.0 bits (181), Expect = 3e-13
Identities = 45/130 (34%), Positives = 66/130 (50%)
Frame = +3
Query: 156 LVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIY 335
L+ +R+ LK + E +I+ L+KVDGK + + GFMDV+ I E +R++Y
Sbjct: 40 LLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEIN--GESYRVVY 97
Query: 336 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 515
+ +G + + T E A KL KV+ P N L THDGRT D KV D +
Sbjct: 98 NDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVS 157
Query: 516 IATTKIMDFI 545
+ KI + I
Sbjct: 158 VPDMKISEII 167
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 76.6 bits (180), Expect = 4e-13
Identities = 43/115 (37%), Positives = 57/115 (49%)
Frame = +3
Query: 123 PVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 302
P P S+ PL + LR+ YA T E I+ + +KVDGKVR D YP G MDV+ +
Sbjct: 28 PGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIEL 87
Query: 303 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 467
NE +R+I D RI EA K+C+++ L HDGR I
Sbjct: 88 TPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNI 142
Score = 35.5 bits (78), Expect = 0.81
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 47 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
HL+R +P+ W +++ G ++ +PS GPH +P
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIP 38
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 76.2 bits (179), Expect = 5e-13
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Frame = +3
Query: 123 PVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 302
P S + P++I LR+ LK E+ +I+ ++KVDG++ D +P GFMDV+SI
Sbjct: 30 PATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVLSI 89
Query: 303 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRYPD 479
+ + ++YD KG+ I + P KL K VK+ G + L HDG+TI
Sbjct: 90 DTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVTDR 148
Query: 480 PLIKVNDSIQLDIATTKI 533
I +D + + I +I
Sbjct: 149 KDINTSDVLLMKIPDLEI 166
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 72.1 bits (169), Expect = 8e-12
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 2/143 (1%)
Frame = +3
Query: 123 PVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 302
P P S + PL++ +R+ LKYA E KI++ I +DG R + +PAG MDV+SI
Sbjct: 34 PGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSI 93
Query: 303 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVATGPKNVPYLVTHDGRTIRYP 476
+ +E + +++D GR ++ + ++ KLCK+ K V G N+ L HDGR
Sbjct: 94 PEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVVKG-GNI-QLNLHDGR----- 144
Query: 477 DPLIKVNDSIQLDIATTKIMDFI 545
+ ++KV+D+ + + K D +
Sbjct: 145 NQIVKVSDAAKAEEDVYKTGDSV 167
Score = 48.8 bits (111), Expect = 8e-05
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +2
Query: 32 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
+GP+KHLKRL AP W L + + RPS GPH + + LP
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLP 44
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 69.7 bits (163), Expect = 4e-11
Identities = 43/127 (33%), Positives = 64/127 (50%)
Frame = +3
Query: 153 PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI 332
PLV+ LR+ LK A +E+ KI+ + + VDGKVR D Y G D +SI N +R++
Sbjct: 40 PLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVV 99
Query: 333 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 512
+ G+F H + +A K+CK+ L HDG T+ + K DS+ L
Sbjct: 100 IGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVIL 156
Query: 513 DIATTKI 533
+ KI
Sbjct: 157 KMPERKI 163
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 69.3 bits (162), Expect = 5e-11
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Frame = +3
Query: 123 PVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 302
P P S A P+ ++LR+ L A EV ++ + VDG+ D +P G DV++I
Sbjct: 34 PGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAI 93
Query: 303 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRYPD 479
+ NE +R++ D +G+ + +I EEA K K +++V+ + Y +T DGRT D
Sbjct: 94 PEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGD 151
Query: 480 PLIKVNDSIQLDIATTKIMDFI 545
K + + +I KI + I
Sbjct: 152 NSYKTHYGVVYEIPNFKIREVI 173
Score = 32.7 bits (71), Expect = 5.7
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 41 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLP 154
K+HL+ L P+ W + K G + +PS GPH +P
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMP 44
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 68.1 bits (159), Expect = 1e-10
Identities = 42/113 (37%), Positives = 53/113 (46%)
Frame = +3
Query: 129 PTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 308
P + PL I L+ LK T E +I+ + VDGKVR D YP G MDVV I
Sbjct: 30 PHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPS 89
Query: 309 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 467
+ R+I D T I+ E+AKYK ++ T V L DGR I
Sbjct: 90 ADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNI 142
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 66.1 bits (154), Expect = 5e-10
Identities = 41/128 (32%), Positives = 61/128 (47%)
Frame = +3
Query: 141 ASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNEL 320
A A P+ ++LR + A +EV KI+ QR + V+G+ D G D+VSI K +
Sbjct: 34 AGALPVGVWLREHIGLAQNASEVKKILHQRDVLVNGRACKDSRMGLGVFDIVSIPKLGKH 93
Query: 321 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVND 500
+R+ DVKG I E AK +LCK++ T L G + D K D
Sbjct: 94 YRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGANV-LADNTYKAKD 152
Query: 501 SIQLDIAT 524
S+ + + T
Sbjct: 153 SVVVTLGT 160
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 64.9 bits (151), Expect = 1e-09
Identities = 36/116 (31%), Positives = 59/116 (50%)
Frame = +3
Query: 120 QPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 299
+P P S A + PL + +R+ LK E +I+ + + VDG R D +P G DV++
Sbjct: 27 RPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVIT 86
Query: 300 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 467
+ NE +R++ D KGR ++++ E KLC++ T L +DG I
Sbjct: 87 LPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDGTNI 141
Score = 35.1 bits (77), Expect = 1.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 47 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPXG 160
H KRL+ PK+W + + G + GPH LP G
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLG 40
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 62.5 bits (145), Expect = 6e-09
Identities = 34/136 (25%), Positives = 61/136 (44%)
Frame = +3
Query: 129 PTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 308
P S + L+ ++ A E K+VK + V+GK +P MD +S
Sbjct: 35 PHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPL 94
Query: 309 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 488
N+ +R++ G+ T++ I E K+CKV ++ ++T D R ++ I
Sbjct: 95 ANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKI 154
Query: 489 KVNDSIQLDIATTKIM 536
KV DS+ + +I+
Sbjct: 155 KVEDSLLIKTINDEIV 170
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 59.7 bits (138), Expect = 4e-08
Identities = 36/109 (33%), Positives = 55/109 (50%)
Frame = +3
Query: 153 PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI 332
PL + LR+ L A E +++ R + VDG++ TD G MDV+++ + + FR I
Sbjct: 40 PLGVILRDVLDLAHNLREAKRMLATRQVLVDGRIETDLGRGVGLMDVLTVGEDS--FRCI 97
Query: 333 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 479
DV G+ I+ + A KLC+V +T + HDGR I D
Sbjct: 98 LDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSD 146
Score = 37.9 bits (84), Expect = 0.15
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 47 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPXG 160
H+KRL P++W L + ++ +P+ G H C+P G
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLG 42
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 59.7 bits (138), Expect = 4e-08
Identities = 30/92 (32%), Positives = 52/92 (56%)
Frame = +3
Query: 144 SACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELF 323
SA P+ I+LR+ +++AL EV KI+ R + ++G + TD D++S K ++ +
Sbjct: 34 SALPIGIWLRDHMQFALNTKEVRKILHDRQVLLNGHIVTDEHIGIDVFDIISFPKIDKHY 93
Query: 324 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 419
++ D KGR + I+ + AK +L KV T
Sbjct: 94 MILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 57.2 bits (132), Expect = 2e-07
Identities = 42/134 (31%), Positives = 64/134 (47%)
Frame = +3
Query: 144 SACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELF 323
S+ PL+I LR+ LK E+ +I+ L+ VDGKV + GFMD +++ + L
Sbjct: 36 SSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTVSGNDYL- 94
Query: 324 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 503
+ YD KG+ I E KL +VK + HDG T+ IK DS
Sbjct: 95 -VSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDS 153
Query: 504 IQLDIATTKIMDFI 545
+ + I +I+D +
Sbjct: 154 VLVKIPKKEIVDVL 167
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 56.4 bits (130), Expect = 4e-07
Identities = 36/142 (25%), Positives = 67/142 (47%)
Frame = +3
Query: 120 QPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 299
+P P + + PL + LR+ L E +++ + + VDG R D +P G MD+++
Sbjct: 28 RPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGNVLVDGVARKDLRFPVGLMDIIT 87
Query: 300 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 479
I N +R++ D K R ++++ A KLC+++ + + + +DG I
Sbjct: 88 IPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIEGKTSIKEGKIQMRLNDGVNI-IGS 145
Query: 480 PLIKVNDSIQLDIATTKIMDFI 545
DSI L + K++ I
Sbjct: 146 NNYNTKDSIILSVPDKKVVKHI 167
Score = 31.9 bits (69), Expect = 9.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 47 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
H KR++ PK+W + K + GPH + +P
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIP 39
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 52.8 bits (121), Expect = 5e-06
Identities = 32/112 (28%), Positives = 51/112 (45%)
Frame = +3
Query: 144 SACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELF 323
S PL+I LR+ L YA E + + + ++GK +D P G D+++ + E +
Sbjct: 35 SGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYY 94
Query: 324 RLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 479
R+ GR + I P+ A+ KL K+ L HDG T+ D
Sbjct: 95 RVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVED 146
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 50.8 bits (116), Expect = 2e-05
Identities = 34/128 (26%), Positives = 57/128 (44%)
Frame = +3
Query: 153 PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI 332
P + LR+ L T E K + ++VDG RT + G MDVV + T +++R++
Sbjct: 44 PSAVLLRDTLGAVSTLREAKKSIYSGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMV 103
Query: 333 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 512
+I E K+C+V + + HDGR++ D + V DS +
Sbjct: 104 PSGGAILKPVKIEAAEKDRKICRVTSKTSISGGRTQIGFHDGRSL-ISDEKVSVGDSCLV 162
Query: 513 DIATTKIM 536
+ KI+
Sbjct: 163 QVPGQKIL 170
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 39.5 bits (88), Expect = 0.050
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +3
Query: 204 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKG 347
E L I KQ+ +KV+ K + DPT+P D SIE +++ L+ + KG
Sbjct: 126 EELDINKQQKVKVEHKKQLDPTFPRNDFDKFSIEDMDQVLNLLSNYKG 173
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 37.1 bits (82), Expect = 0.26
Identities = 24/86 (27%), Positives = 44/86 (51%)
Frame = -1
Query: 545 DEVHNLRSCNV*LDGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGD 366
D + +L +V +G+ D + + +GAA+++ R+ L QLVL D
Sbjct: 108 DRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLD 167
Query: 365 TVDCESALNIID*TKQFISLLN*DNI 288
V ES+L ++D + FI+L + D++
Sbjct: 168 AVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 34.7 bits (76), Expect = 1.4
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -1
Query: 320 QFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTI 174
Q I+ N +NI + I + N P E LFH F DFVSG ++ I
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGI 98
>UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas mendocina ymp
Length = 783
Score = 32.3 bits (70), Expect = 7.5
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 509 LDGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLR 372
L+ I+ F + + + G + QVR+ILR+GRH L VL + R
Sbjct: 420 LNSILGFAQLLEMDRGTPAQQAQVRHILRAGRHLLGLINEVLDIAR 465
>UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precursor;
n=17; Amniota|Rep: Uncharacterized protein CXorf36
precursor - Homo sapiens (Human)
Length = 182
Score = 32.3 bits (70), Expect = 7.5
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 267 TYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 413
+YPA + D I + E+FRL+ + + RI + K C ++RV
Sbjct: 96 SYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERV 144
>UniRef50_Q5FHB1 Cluster: High-affinity zinc uptake system protein
znuA; n=4; canis group|Rep: High-affinity zinc uptake
system protein znuA - Ehrlichia ruminantium (strain
Gardel)
Length = 287
Score = 31.9 bits (69), Expect = 9.9
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 330 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 455
+YD R TI RIT E A+ K+K++ K PY+VTHD
Sbjct: 153 VYDKNARLTIIRIT-ELAE----KIKQLLNTVKTKPYVVTHD 189
>UniRef50_A3SDJ8 Cluster: Putative LysR-family protein
transcriptional regulator; n=1; Sulfitobacter sp.
EE-36|Rep: Putative LysR-family protein transcriptional
regulator - Sulfitobacter sp. EE-36
Length = 292
Score = 31.9 bits (69), Expect = 9.9
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -1
Query: 305 LN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQXASTRATCGD 126
LN SSRIS + + + L++ FH + V+G IL+T + + RAT D
Sbjct: 25 LNVSQATVSSRISSLETDLQVELFDREFHATRITVAGAMILKTAQEMLATERNLRATLSD 84
Query: 125 RLT 117
T
Sbjct: 85 PTT 87
>UniRef50_Q22BQ8 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1926
Score = 31.9 bits (69), Expect = 9.9
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 392 LVLSLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRISRVSPNFPI 243
+V + D +D + LNI D T+QFIS D K + +S ++ NF I
Sbjct: 295 IVYKMRNKDQIDIVTDLNITDQTQQFISFNISDYSFKQTSVSILNSNFTI 344
>UniRef50_A2DLM0 Cluster: Ser/Thr protein phosphatase, putative;
n=2; Trichomonas vaginalis G3|Rep: Ser/Thr protein
phosphatase, putative - Trichomonas vaginalis G3
Length = 475
Score = 31.9 bits (69), Expect = 9.9
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = -1
Query: 518 NV*LDGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALN 339
NV + I + +WV G RY+ R R+ H + + +LL D VDCE+ LN
Sbjct: 400 NVTRETINNAAEWVRTT-GEGQWRYRERIYTRADEHNAFYYCALKALLPDDIVDCENKLN 458
Query: 338 I 336
I
Sbjct: 459 I 459
>UniRef50_Q9YA06 Cluster: Putative uncharacterized protein; n=1;
Aeropyrum pernix|Rep: Putative uncharacterized protein -
Aeropyrum pernix
Length = 731
Score = 31.9 bits (69), Expect = 9.9
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = -2
Query: 391 LYLASSGVIRWIVNLPLTS*IRRNSSLVFSIETTSINP 278
+++ASSG + W+ + PL + + R + ++FS + ++NP
Sbjct: 672 IHVASSGFLGWVFDKPLENRLLRAAMVLFSALSVTLNP 709
>UniRef50_Q4PE27 Cluster: Palmitoyltransferase PFA4; n=1; Ustilago
maydis|Rep: Palmitoyltransferase PFA4 - Ustilago maydis
(Smut fungus)
Length = 604
Score = 31.9 bits (69), Expect = 9.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 218 NFQDFVSGQSILQTIPQENHQXASTRATCGDRLTVSVHTHRQ 93
+F+ S +LQT+ Q++H R C D LT SV H Q
Sbjct: 375 SFRSHKSRHWMLQTMLQDSHVALGERQQCTDSLTYSVDVHDQ 416
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,540,934
Number of Sequences: 1657284
Number of extensions: 11627605
Number of successful extensions: 30730
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 29800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30719
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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