Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0599
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 221 7e-59
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 219 2e-58
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 219 2e-58
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c... 28 0.78
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 1.4
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 5.5
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 7.3
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 9.6
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 25 9.6
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 9.6
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 25 9.6
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 221 bits (539), Expect = 7e-59
Identities = 104/159 (65%), Positives = 119/159 (74%)
Frame = +3
Query: 69 PKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 248
P H L+ P P PL++FLRNRLKYAL G EV I+ QRLIKVDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 249 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 428
KVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 429 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 545
VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FI
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFI 173
Score = 78.6 bits (185), Expect = 6e-16
Identities = 32/43 (74%), Positives = 35/43 (81%)
Frame = +2
Query: 26 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLP
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLP 43
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 219 bits (536), Expect = 2e-58
Identities = 103/159 (64%), Positives = 119/159 (74%)
Frame = +3
Query: 69 PKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 248
P H L+ P P PL++FLRNRLKYAL G EV I+ QRLIKVDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 249 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 428
KVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 429 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 545
VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FI
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFI 173
Score = 78.6 bits (185), Expect = 6e-16
Identities = 32/43 (74%), Positives = 35/43 (81%)
Frame = +2
Query: 26 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLP
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLP 43
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 219 bits (535), Expect = 2e-58
Identities = 103/159 (64%), Positives = 119/159 (74%)
Frame = +3
Query: 69 PKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 248
P H L+ P P PL++FLRNRLKYAL G EV I+ QRLI+VDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDG 74
Query: 249 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 428
KVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 429 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 545
VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FI
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFI 173
Score = 78.6 bits (185), Expect = 6e-16
Identities = 32/43 (74%), Positives = 35/43 (81%)
Frame = +2
Query: 26 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLP
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLP 43
>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 28.3 bits (60), Expect = 0.78
Identities = 26/98 (26%), Positives = 47/98 (47%)
Frame = -1
Query: 335 ID*TKQFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 156
ID +QF+ L+ S+ R + + IN Y LFH+ + G+S+ +T +
Sbjct: 55 IDSLRQFVQQLSVRQ--NMSKDRREALTYFINSYNDLFHDVY-YGDGRSMSKT------E 105
Query: 155 XASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS 42
A T T T+ + ++ P+ + W+RLS + A+
Sbjct: 106 EAQTIVT----FTIGSYLYKYTHPSELFWQRLSDNMAN 139
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 1.4
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 222 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 401
K++ K+ +R + +P + +I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 402 VK-RVATGPKNVPYLVTHDGR 461
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 488 QSQRFHPVRHCNYED 532
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 288 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 464
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 465 IR 470
++
Sbjct: 1778 LK 1779
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 383 SLLRGDTVDCESALNIID*TKQ 318
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 156 LVIFLRNRLKYALTGNEVLKIV 221
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 274 G*VGSVLTFPSTFMRRCFTIFR 209
G +G LTFP+ +RR F + R
Sbjct: 237 GIIGQTLTFPADVLRRRFQVNR 258
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 132 TSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 275
T A+ ++ + N+L Y TGNE+ +Q ++ V + + +P+ P
Sbjct: 58 TDKAAELGRLLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -1
Query: 269 SRVSPNFPINLYEALFHNFQDFVSGQSIL 183
S++ P I+LY L+H+ +++ Q ++
Sbjct: 410 SKIDPRVVISLYPDLYHSELSYIAFQGVI 438
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 9.6
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 204 EVLKIVKQRLIKVDGKV--RTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 377
EV K+ ++ I+ G DP+Y +D +S+++ + RL+ D + + R+ E
Sbjct: 194 EVYKLAAEKGIRRTGHAGEEGDPSYIRSGLDNLSLQRIDHGIRLVED---KELMKRVAEE 250
Query: 378 EAKYKLCKVKRV 413
+C + +
Sbjct: 251 NIMLTMCPLSNL 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,579
Number of Sequences: 5004
Number of extensions: 47830
Number of successful extensions: 134
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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