Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0599
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 194 4e-50
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 190 6e-49
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 189 1e-48
11_06_0087 - 19919224-19922304 29 1.8
04_03_1015 - 21734381-21736534 29 1.8
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 3.2
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 4.2
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 4.2
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573 27 7.4
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 7.4
01_01_0990 + 7847066-7847478,7847713-7848679 27 7.4
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 27 7.4
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 194 bits (473), Expect = 4e-50
Identities = 94/173 (54%), Positives = 113/173 (65%)
Frame = +3
Query: 27 WREALRSI*SA*TLPKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNE 206
W L+ P H L P PL++ LRNRLKYALT E
Sbjct: 17 WARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 76
Query: 207 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 386
V+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK
Sbjct: 77 VISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAK 136
Query: 387 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 545
+KLCKV+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFI
Sbjct: 137 FKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFI 189
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 190 bits (463), Expect = 6e-49
Identities = 89/159 (55%), Positives = 110/159 (69%)
Frame = +3
Query: 69 PKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 248
PKH L P PL++ +RNRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 249 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 428
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 429 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 545
+PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFI
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFI 173
Score = 85.4 bits (202), Expect = 3e-17
Identities = 36/43 (83%), Positives = 39/43 (90%)
Frame = +2
Query: 26 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLP
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLP 43
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 189 bits (461), Expect = 1e-48
Identities = 88/159 (55%), Positives = 110/159 (69%)
Frame = +3
Query: 69 PKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 248
PKH L P PL++ +RNRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 249 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 428
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 429 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 545
+PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFI
Sbjct: 135 GIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFI 173
Score = 85.4 bits (202), Expect = 3e-17
Identities = 36/43 (83%), Positives = 39/43 (90%)
Frame = +2
Query: 26 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLP
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLP 43
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 421 DLRMFRTW*RMMAA-PSAIQTHLSKSTIPSS*TLQLRRL 534
DL R W +A PS HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 385 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 510
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 142 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 29
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3
Query: 135 LWGPVDGLGAYTPPSLSNIHALGAFKR 55
L G G+G Y PPSLSN + AFKR
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 321 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 425
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
Length = 409
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 8 ARGLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLREC 148
AR L ++ G KKH R + K W ++ G YA H ++ C
Sbjct: 102 ARALGDLT-GIKKHFSRKHGEKRWRCERCGKRYAVHSDWKAH-VKNC 146
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 290 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 195
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 2 NSARGLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPH 133
N +R L ++ G KKH R + K W DK YA + H
Sbjct: 77 NPSRALGDLT-GIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAH 119
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 8 ARGLSNMARGPKKHLKRLNAPKAWMLDKLGGVYA 109
AR L ++ G KKH R + K W DK YA
Sbjct: 129 ARALGDLT-GIKKHFSRKHGEKKWKCDKCSKRYA 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,844,461
Number of Sequences: 37544
Number of extensions: 333159
Number of successful extensions: 945
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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