Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0599
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             215   2e-56
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   3.3  
SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       27   7.6  
SB_36195| Best HMM Match : Pentaxin (HMM E-Value=1.9)                  27   7.6  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  215 bits (525), Expect = 2e-56
 Identities = 103/159 (64%), Positives = 119/159 (74%)
 Frame = +3

Query: 69  PKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 248
           PKH     L+          P       PL+IFLRNRLKYAL G EV KIVKQRLIK+DG
Sbjct: 439 PKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQRLIKIDG 498

Query: 249 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 428
           KVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K
Sbjct: 499 KVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAK 558

Query: 429 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 545
            VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+I
Sbjct: 559 GVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYI 597



 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 39/43 (90%), Positives = 41/43 (95%)
 Frame = +2

Query: 26  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
           MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLP
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLP 467


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +3

Query: 183 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 350
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +2

Query: 170 EES--SEVCFDRKRSPENCE 223
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1392

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
 Frame = +3

Query: 120  QPVPTSCASACPLVIFLRN-RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 296
            QP  +   S   +V+ +R+    Y L+G  V +I  Q  +  + K  +D      F D  
Sbjct: 680  QPTVSLFRSVQSVVLLVRSVSQSYYLSGRSVSRISCQETVDKEKKKFSDQ-----FPD-- 732

Query: 297  SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT---HDGRTI 467
              EK  E F++ +++  R   ++I P +A  ++CK        +++ YL++   HDGR I
Sbjct: 733  --EKIQE-FKIAFEMYCRKD-YKI-PTKALPRVCKSLGYNYTLQDLDYLISGEFHDGRGI 787

Query: 468  RYPDPLIKVNDSIQLDIATTKIMD 539
             +P+ L  +++        T I+D
Sbjct: 788  TFPEFLKMMSEMTFYHKTDTDILD 811


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 247 PSTFMRRCFTIFRTSFPVKAYFRRFLRK 164
           PS++    F +FRT FP   +  RF R+
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRR 111


>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 14   GLSNMARGPKKHLKRLNAPKAWMLDKL-GGVYAPRPSTGPHKLRECLPXGD 163
            G  N A+G    LKR +  K  +++ L G  Y P PST P      LP G+
Sbjct: 1642 GKKNDAKGTPM-LKRKDKVKNMIVNWLPGAAYQPVPSTFPSHEHHLLPPGE 1691


>SB_36195| Best HMM Match : Pentaxin (HMM E-Value=1.9)
          Length = 192

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 125 GPHKLRECLPXGDFPEESSEV-CFDRKRSPE 214
           GP KLR   P  DFP   S++  +DR  SPE
Sbjct: 51  GPRKLRLLRPYPDFPGAISDLNVWDRVLSPE 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,171,940
Number of Sequences: 59808
Number of extensions: 381170
Number of successful extensions: 921
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)