Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0599
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 176 1e-44
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z50796-2|CAA90669.2| 261|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z83223-3|CAB05717.2| 385|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 3.8
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 27 6.7
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 27 6.7
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 27 6.7
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 27 8.8
Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical p... 27 8.8
Z78539-2|CAB01729.2| 410|Caenorhabditis elegans Hypothetical pr... 27 8.8
AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid deplete... 27 8.8
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 176 bits (428), Expect = 1e-44
Identities = 83/141 (58%), Positives = 102/141 (72%)
Frame = +3
Query: 123 PVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 302
P P + PL +FLRNRLKYAL E KI+ QR+++VDGKVRT +P GFMDVV+I
Sbjct: 32 PGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAI 91
Query: 303 EKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 482
E+TNE FR++YD KGR+ +HRI EA +KLCKVK V T K VP L T DGRTIRYPDP
Sbjct: 92 ERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDP 151
Query: 483 LIKVNDSIQLDIATTKIMDFI 545
+KVND+I +I+T KI D +
Sbjct: 152 HVKVNDTIVFNISTQKITDSV 172
Score = 76.6 bits (180), Expect = 1e-14
Identities = 34/45 (75%), Positives = 36/45 (80%)
Frame = +2
Query: 32 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPXGDF 166
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LP F
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLF 46
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 345 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 476
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>Z50796-2|CAA90669.2| 261|Caenorhabditis elegans Hypothetical
protein T05A6.5 protein.
Length = 261
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +3
Query: 129 PTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 269
P+ CAS C +++F N L+ NE++K+ + K++G ++ + T
Sbjct: 34 PSDCASVCAVLVFNSNT---DLSENELVKLF-SNMSKINGDIKIENT 76
>Z83223-3|CAB05717.2| 385|Caenorhabditis elegans Hypothetical
protein E01G4.5 protein.
Length = 385
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +2
Query: 23 NMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPXGDFPEESSEVCFDRK 202
N A P K + +N + ++L+ GV R H L + L G ++ FD+K
Sbjct: 115 NRASLPPKGTRDVNRMRQFILEHTFGVKNERICGPSHCLPKALAVG-------KLLFDKK 167
Query: 203 RSPENCETTPHKG*WES 253
R P++ E + W+S
Sbjct: 168 RCPDSVERAALENKWQS 184
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -2
Query: 502 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 338
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 461 HHPLSRPTYQSQRFHPVRHCNYEDYGLH 544
HH PTY F+P H +Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 293 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 156
N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 210 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 293 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 156
N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 232 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 132 WGPVDGLGAYTPPSLSNIHALGAF 61
+GP+ GLG +T P+L + G F
Sbjct: 75 FGPIPGLGNFTLPTLGTLPGFGNF 98
>Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical
protein Y69H2.10a protein.
Length = 572
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 132 WGPVDGLGAYTPPSLSNIHALGAF 61
+GP+ GLG +T P+L + G F
Sbjct: 75 FGPIPGLGNFTLPTLGTLPGFGNF 98
>Z78539-2|CAB01729.2| 410|Caenorhabditis elegans Hypothetical
protein C31E10.3 protein.
Length = 410
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +3
Query: 81 CWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRT 260
CW N + + PT+C C ++ F K L E LK Q L + G +R
Sbjct: 34 CWFNKSEVTTETIELWPTNCTKVCSILTFTSTINKIPL---EKLKTTFQNLTVLCGVLRI 90
Query: 261 DPT 269
+ T
Sbjct: 91 ENT 93
>AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid depleted
protein 5 protein.
Length = 176
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 411 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 539
++TG N+P +HD + + D L K + + +++ + MD
Sbjct: 20 LSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMD 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,113,470
Number of Sequences: 27780
Number of extensions: 276024
Number of successful extensions: 629
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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