Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0599
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   197   5e-51
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             196   6e-51
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   196   6e-51
At1g29760.1 68414.m03639 expressed protein                             31   0.50 
At5g15400.1 68418.m01802 U-box domain-containing protein contain...    30   0.88 
At4g08180.3 68417.m01353 oxysterol-binding family protein simila...    28   3.5  
At4g08180.2 68417.m01352 oxysterol-binding family protein simila...    28   3.5  
At4g08180.1 68417.m01351 oxysterol-binding family protein simila...    28   3.5  
At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein ...    28   4.7  
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ...    28   4.7  
At4g38440.1 68417.m05432 expressed protein                             27   8.2  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  197 bits (480), Expect = 5e-51
 Identities = 95/159 (59%), Positives = 112/159 (70%)
 Frame = +3

Query: 69  PKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 248
           PKH     L           P       PLV+ +RNRLKYALT  EV+ I+ QR I+VDG
Sbjct: 15  PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDG 74

Query: 249 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 428
           KVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K
Sbjct: 75  KVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQK 134

Query: 429 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 545
            +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FI
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFI 173



 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 36/43 (83%), Positives = 39/43 (90%)
 Frame = +2

Query: 26  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLP
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLP 43


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  196 bits (479), Expect = 6e-51
 Identities = 95/159 (59%), Positives = 112/159 (70%)
 Frame = +3

Query: 69  PKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 248
           PKH     L           P       PLV+ +RNRLKYALT  EV+ I+ QR I+VDG
Sbjct: 15  PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDG 74

Query: 249 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 428
           KVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K
Sbjct: 75  KVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQK 134

Query: 429 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 545
            +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FI
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFI 173



 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 36/43 (83%), Positives = 39/43 (90%)
 Frame = +2

Query: 26  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLP
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLP 43


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  196 bits (479), Expect = 6e-51
 Identities = 95/159 (59%), Positives = 112/159 (70%)
 Frame = +3

Query: 69  PKHGCWTNLAVCMHRDRQPVPTSCASACPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 248
           PKH     L           P       PLV+ +RNRLKYALT  EV+ I+ QR I+VDG
Sbjct: 15  PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDG 74

Query: 249 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 428
           KVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K
Sbjct: 75  KVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQK 134

Query: 429 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 545
            +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FI
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFI 173



 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 36/43 (83%), Positives = 39/43 (90%)
 Frame = +2

Query: 26  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLP 154
           MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLP
Sbjct: 1   MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLP 43


>At1g29760.1 68414.m03639 expressed protein
          Length = 526

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 262 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 170
           S+LTFP   +R CF  F   F    + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225


>At5g15400.1 68418.m01802 U-box domain-containing protein contains
           Pfam profile PF04564: U-box domain
          Length = 1038

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 77  WMLDKLGGVYAPRPSTGPHKLRECLPXGDFPEESSEVCFDRKRSPENCETTP 232
           W++  +GG   P PST P +   C+P   F E++ E+     R P+  +  P
Sbjct: 566 WLVGLVGGFKMPLPSTCPMEF-SCMPE-HFVEDAMELLIFASRIPKALDGVP 615


>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 174 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 308
           N  ++A+T NE+   +K+RL   D ++R D  Y   G  ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748


>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 174 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 308
           N  ++A+T NE+   +K+RL   D ++R D  Y   G  ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748


>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 814

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 174 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 308
           N  ++A+T NE+   +K+RL   D ++R D  Y   G  ++ + EK
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 749


>At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 392

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 8   ARGLSNMARGPKKHLKRLNAPKAWMLDKLGGVYA 109
           AR L ++  G KKH  R +  K W  DK    YA
Sbjct: 61  ARALGDLT-GIKKHFSRKHGEKKWKCDKCSKKYA 93


>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 446

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 8   ARGLSNMARGPKKHLKRLNAPKAWMLDKLGGVYA 109
           AR L ++  G KKH  R +  K W  DK    YA
Sbjct: 123 ARALGDLT-GIKKHFSRKHGEKKWKCDKCSKKYA 155


>At4g38440.1 68417.m05432 expressed protein
          Length = 1465

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 53   KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECL 151
            +R+  P  W L  +  V++ + STGP +  E L
Sbjct: 1140 QRMPLPPHWFLSAISAVHSGKTSTGPPESTELL 1172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,076
Number of Sequences: 28952
Number of extensions: 260743
Number of successful extensions: 658
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)