Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0595
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.058
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        31   0.54 
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    30   1.2  
SB_6360| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0092)            30   1.6  
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)         29   2.9  
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)           29   2.9  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.0  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   5.0  
SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)           28   5.0  
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)                28   5.0  
SB_38418| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        27   8.8  
SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +3

Query: 372 DTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGK 515
           D +++  K    +  +LE +  DL+  +KRKD+ I+DLN  V D + K
Sbjct: 400 DELRKTKKKMQVQYEKLEHQLDDLKVQLKRKDVVIADLNKVVEDYKRK 447


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
 Frame = +3

Query: 423  EDEKFD--LEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSK--YENKFAKLQKKAAE 590
            ++EKF   L  ++ RKD  I +LN+++  L+G + K T ++++K   EN+  K  K+  E
Sbjct: 997  QNEKFSETLNSVISRKDKAIDELNAKIRHLQGDYDK-TRRQLNKILVENENLKGSKEDLE 1055


>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 369 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 497
           ED + R  +   +RI RLE    DL+ + +R     SD+N++V
Sbjct: 22  EDLMTRRFRGLEDRIGRLESTVSDLQLLQRRNGRFFSDINTRV 64


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +3

Query: 369  EDTIKRVCKDYHERIARLE---DEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKK 539
            ED +++V K     +A L+   +EK D E +++   + +++LN+Q+ DL  +    TL++
Sbjct: 1901 EDELEKVRKKEVSLLATLDTLREEKKDQEQMLQDNGIRLAELNTQIQDLFEE--NKTLEE 1958

Query: 540  VSKYENKFAKLQKKAAE 590
              K  N   KL+  A E
Sbjct: 1959 --KVSNDSYKLESAAGE 1973



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +3

Query: 360  DANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKK 539
            D  E TIK + ++ +    R +DE  DL   V +K+ E   L++Q++DLR K +      
Sbjct: 3021 DIAESTIKNIKQEKN----RFQDEVNDLHGKVSQKNSENELLHAQLDDLR-KQITGYQGN 3075

Query: 540  VSKYENKFAKLQKK 581
            +   E    +LQ++
Sbjct: 3076 IKSLEENSNRLQER 3089


>SB_6360| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0092)
          Length = 107

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 396 DYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQ 575
           D + ++  L  +  DL+  V   D ++ DLN++V+DL  K V     KV     K   L 
Sbjct: 26  DLNAKVHDLNTKVHDLDTKVHDLDTKVHDLNTKVHDLNTK-VHDLNTKVHDLNTKVHDLN 84

Query: 576 KKAAEFN 596
            K  + N
Sbjct: 85  TKVHDLN 91


>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
          Length = 1127

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 366 NEDTIKRV-CKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKV 542
           NE  I R  CKD    I+R       LE     ++  I  L + +N+L          K+
Sbjct: 366 NELVISRKKCKDQGAEISRQSSHIGKLEATKLSQETNIRSLKANINELN--------SKL 417

Query: 543 SKYENKFAKLQKK 581
           SKYE  + +L+K+
Sbjct: 418 SKYEGDYEELEKQ 430


>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
          Length = 2040

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 396 DYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLK--KVSKYENKFAK 569
           D + ++  L  +  DL   V   + ++ DLN++VNDL  K  K   +  KV+    K   
Sbjct: 348 DLNTKVHDLNTKLHDLNTKVHDLNAKVHDLNTKVNDLNTKNTKVNDQNTKVNDLNTKVHD 407

Query: 570 LQKKAAEFN 596
           L  K  + N
Sbjct: 408 LNAKVHDLN 416



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 396 DYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQ 575
           D + ++  L  +  DL   V   + ++ DLN++VNDL  K V     KV     K   L 
Sbjct: 299 DLNTKLHNLNTKLHDLNTKVHDLNTKLHDLNTKVNDLNTK-VHDFNTKVHDLNTKVHDLN 357

Query: 576 KKAAEFN 596
            K  + N
Sbjct: 358 TKLHDLN 364


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +3

Query: 360 DANEDTIKRVCKDYHERIARLEDE 431
           + +E+ +++V +DY E+IARL++E
Sbjct: 144 EPDEEQLEQVRRDYEEQIARLQEE 167


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/54 (22%), Positives = 31/54 (57%)
 Frame = +3

Query: 363  ANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVK 524
            A+++ I+   +    ++++++DE  +L+    R+  EI DL +++N+L     +
Sbjct: 1352 ASKEYIEGQLESLKAQMSKIKDENENLKESDARRQQEILDLENRINELENMLAR 1405


>SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)
          Length = 788

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 369 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSK 548
           ++T+ RV  D   R   L++E+    +  +  D E+SD+ SQ+  +  K V        K
Sbjct: 374 QETLTRV--DLENRCQSLQEEQ---NFKKQMYDKELSDIRSQLKTVETKRVVVETDYKDK 428

Query: 549 YENKFA-KLQKKAAEFN 596
           YE   A KLQ+   +++
Sbjct: 429 YEGLMAEKLQELREDYD 445


>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
          Length = 722

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 348 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 485
           + +  +NE  + RV  D  E  + L+ +K DLE I ++ +    +L
Sbjct: 51  EELQTSNESELMRVRSDLEEMTSLLQSKKVDLEKIKEQNEKAAKEL 96


>SB_38418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 471 EISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKK 581
           EI     +V++L+G+F K  +  + + +  F KLQ K
Sbjct: 112 EIEGFFDEVHELKGQFNKYKMNTIPRLQEVFKKLQSK 148


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +3

Query: 369  EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSK 548
            E  I+       E+I  L +E  +L+  +K+KD  IS+LN  +      F      +VS 
Sbjct: 1048 ESEIEASVASKDEKITILTEEITELKQELKKKDGIISELNDNLT----SFEDEHDSEVSV 1103

Query: 549  YENKFAKLQKKAAE 590
            +     K Q++ AE
Sbjct: 1104 FNENLRKQQEQTAE 1117


>SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +3

Query: 348 KNIDDANEDTIKRVCKDYHERIARLE---DEKFDLEYIVKRKDMEISDLNSQVNDLRGKF 518
           KN    NED    + +++ E IARL+   D +   +  VKR+  + ++   +V+D   + 
Sbjct: 732 KNKPHINEDPKDALLREFQEEIARLKNELDRRGGKKKKVKRRREDGTE--EEVDDEDEEQ 789

Query: 519 VKPTLKKVSKYENKFAKLQKKA 584
            +  L+++ K E +  + +KKA
Sbjct: 790 SQAQLEEIMKAEQEKIEQEKKA 811


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,174,794
Number of Sequences: 59808
Number of extensions: 207739
Number of successful extensions: 626
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)