Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0594
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 287 7e-79
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 287 9e-79
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 1.0
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.0
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.8
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 2.3
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 2.3
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 2.3
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 2.3
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.1
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 5.4
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 26 5.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.4
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.2
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 7.2
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.2
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 9.5
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 287 bits (705), Expect = 7e-79
Identities = 130/192 (67%), Positives = 157/192 (81%)
Frame = +1
Query: 76 RDKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 255
++KPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC
Sbjct: 13 KNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICA 72
Query: 256 NKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIG 435
NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IG
Sbjct: 73 NKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIG 132
Query: 436 QPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLAN 615
Q +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G +
Sbjct: 133 QVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIP 192
Query: 616 DGCIVQYPPEHG 651
DGC ++ + G
Sbjct: 193 DGCYAKFLNKRG 204
Score = 33.5 bits (73), Expect = 0.027
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 39 MGRRPARCYRYCK 77
M RRPARCYRYCK
Sbjct: 1 MARRPARCYRYCK 13
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 287 bits (704), Expect = 9e-79
Identities = 130/192 (67%), Positives = 157/192 (81%)
Frame = +1
Query: 76 RDKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 255
++KPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC
Sbjct: 13 KNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICA 72
Query: 256 NKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIG 435
NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IG
Sbjct: 73 NKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIG 132
Query: 436 QPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLAN 615
Q +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G +
Sbjct: 133 QILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIP 192
Query: 616 DGCIVQYPPEHG 651
DGC ++ + G
Sbjct: 193 DGCYAKFLNKRG 204
Score = 33.5 bits (73), Expect = 0.027
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 39 MGRRPARCYRYCK 77
M RRPARCYRYCK
Sbjct: 1 MARRPARCYRYCK 13
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 1.0
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = +1
Query: 310 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 477
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 478 QVIEALRRAKFKFPGRQKIYVSK 546
AL++A F PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 97 SRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAG 243
++FC V + KI + +KRA +D LC+ +S + E ++ +LE+G
Sbjct: 45 TKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 121 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 240
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 612 SEXALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 478
S+ F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 612 SEXALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 478
S+ F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 612 SEXALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 478
S+ F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 612 SEXALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 478
S+ F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 155 RERPLTTFHCACTWCPTNMNS 217
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 414 STLRLAKRTTHPSLEPISSS 355
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 23 LCKDHHGAPASEMLPVLQEINRIRNRGSVGV-YLIPRSVSS 142
+ K H G +S +LP ++ +RNR S V Y I + S
Sbjct: 1 MTKRHSGTLSSSVLPQTNRLSLLRNRESTSVLYTIDLDMES 41
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 482 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAXSLMTAALCST 637
SS + P+S SPD+K YQ G++ + L+ A + C T
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQT 422
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 142 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 285
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 240 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 124
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 283 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 387
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = -3
Query: 227 SELSCSYSSDTKCTHSGKSSTVALFLPKSKIRILGSGTPRQNLDFGYGLSLAVPVASRWP 48
S L + S++ + T S T + P + + + + +DF Y ++ V +R+P
Sbjct: 212 STLPVAPSNEDQRTMESTSPTDSQPQPSAPNLVSSTENEKPRVDFNYAIAYMNKVKARYP 271
Query: 47 APHGDLY 27
P+ D Y
Sbjct: 272 -PNSDTY 277
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 107 VGVYLIPRSVSSIWV 151
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 9.5
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 419 HVFALDSPSC--PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRS 589
H+ +LDS S P AL + + VPS SSP VK ++ G S S SLRS
Sbjct: 422 HIPSLDSSSLLTPLALPNKKAFQPVKF-RVPSFSSPLVKPASSSSFGRSHSHLGTSLRS 479
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,475
Number of Sequences: 5004
Number of extensions: 64301
Number of successful extensions: 231
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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