Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0594
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   294   3e-80
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    33   0.23 
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   5.0  
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    27   8.7  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  294 bits (722), Expect = 3e-80
 Identities = 135/192 (70%), Positives = 156/192 (81%)
 Frame = +1

Query: 76  RDKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 255
           ++KPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E LSSEALEA RIC 
Sbjct: 13  KNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICA 72

Query: 256 NKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIG 435
           NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG
Sbjct: 73  NKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIG 132

Query: 436 QPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLAN 615
             + S+R  +      IEA RRAKFKFPGRQ I  S+KWGFTK++R+++E++R EGRL +
Sbjct: 133 DILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRS 192

Query: 616 DGCIVQYPPEHG 651
           DG  VQ   EHG
Sbjct: 193 DGVGVQLQREHG 204



 Score = 31.9 bits (69), Expect = 0.41
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +3

Query: 39 MGRRPARCYRYCK 77
          MGRRPARCYRY K
Sbjct: 1  MGRRPARCYRYIK 13


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
           protein F53H1.4a protein.
          Length = 1370

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +2

Query: 5   NSARGSLCKDHHGAPASEMLPVLQEINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHC 184
           N       K   G+P+S+  P+         R +VGV    + +   W RR+  L  ++ 
Sbjct: 298 NGTMDKFLKKDTGSPSSKNAPLFSPSKWGEKRIAVGV----KKMEDAWKRRD--LELYNE 351

Query: 185 ACTWCPTNMN 214
           AC+WC  N++
Sbjct: 352 ACSWCEKNLS 361


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 474 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 352
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 385 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 531
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 404 GLPNAPRIPVWSLSAPA 354
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 100 RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 246
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 425 FALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKR 532
           F+LDSP+ P +L  GG     + C    + SP + R
Sbjct: 36  FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLR 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,677,890
Number of Sequences: 27780
Number of extensions: 380185
Number of successful extensions: 1061
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)