Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0593
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    34   0.008
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    30   0.096
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    29   0.29 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      28   0.39 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   1.6  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    26   1.6  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    26   2.1  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   4.8  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   4.8  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    24   6.3  
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    24   6.3  

>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 33.9 bits (74), Expect = 0.008
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +1

Query: 142 SVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRDAAHLAL---LQRPELGITFTKI 312
           S YP   L+   V E   +RLR   +E++ VD + + D     L   +        FTK+
Sbjct: 110 SKYPVHVLVMKGVDEWKIERLRLDGAEIIMVDQIKTEDLIESGLSIGMGSYRYQYMFTKL 169

Query: 313 HCWNLTQYEKCVFLDA 360
             +  TQ++K   LD+
Sbjct: 170 SVFEQTQFDKVCILDS 185


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 30.3 bits (65), Expect = 0.096
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +1

Query: 142 SVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSR----DAAHLALLQRPELGITFTK 309
           S YP V L    + +   D+L+   + V  VD L +     D   +ALL      + FTK
Sbjct: 101 SKYPVVVLAMKGIDQWKLDQLQEDGAIVKVVDPLYAHEVVDDVNDIALLDS-RWSMMFTK 159

Query: 310 IHCWNLTQYEKCVFLDA 360
           +  + + +Y++  FLD+
Sbjct: 160 LRVFEMYEYDRICFLDS 176


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 28.7 bits (61), Expect = 0.29
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 89  DSYAWELWCWP 121
           DSY W  WCWP
Sbjct: 219 DSYFWGAWCWP 229


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 28.3 bits (60), Expect = 0.39
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 151  PAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSR 252
            P V + +P     + D L A +++V+T+DVLD R
Sbjct: 1438 PTVKVSSPRCELHLDDLLSAQYNKVLTLDVLDGR 1471


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 81  AQTTPTLGSSGAGPFAPPRRFGVPCRS 161
           + T P+  SS   PF P R+F V   S
Sbjct: 235 SMTAPSSSSSSVAPFVPRRQFSVSSAS 261


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 124 SLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 231
           +LR+A +  P V +   TV+E +RD    V + VVT
Sbjct: 112 NLRKALTSTPNVTVTEATVNELLRDETGEVITGVVT 147


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 139 GSVYPAVA-LITPTVSEAMRDRLR-AVFSEVVTVDVLDSRDAAHLALLQRPELGITFTKI 312
           G + P +A L T  VSE   D+LR ++++  V++      + +    +   +  +   K 
Sbjct: 175 GFLLPHLASLTTKNVSEPELDKLRHSLYNWWVSILRRLQSNISTSERITYTKAILAIAKH 234

Query: 313 HCWNLTQYEKCVFLD 357
           HCWN  ++   ++L+
Sbjct: 235 HCWNKVEHSALLYLE 249


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 103 GALVLAHSLRRAGSVYPAVALI 168
           G L L H+LR+ G+++P  A +
Sbjct: 317 GWLALTHALRKKGAIFPIHAYL 338


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -3

Query: 351 EYAFLVL-SEVPAVDLCEGDAELWPLEEGQVSRVS*VQNVYRDY 223
           EY +L + SE   V L +    LWP E G V     V     DY
Sbjct: 164 EYPYLKIPSEDSNVALPQAPVLLWPAEFGMVIEEEVVDRTKEDY 207


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 145 PNRRGGANGPAPELPSVGVVCAQSYPCSI*HYEAG 41
           P+R+GGA      +P   V     Y  S   Y+AG
Sbjct: 296 PSRKGGARVELDVVPGTSVPLVHDYGASGTGYQAG 330


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 68  WVTLGTNDSYAWELWCWPIRSAAPV 142
           WV  GT D+YA+ L C   R AA V
Sbjct: 11  WV--GTQDNYAYLLLCEETRQAAIV 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,494
Number of Sequences: 5004
Number of extensions: 21996
Number of successful extensions: 70
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)