Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0593
(362 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004) 83 5e-17
SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 1e-09
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 52 2e-07
SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15) 43 9e-05
SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09) 42 1e-04
SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13) 41 3e-04
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) 29 0.85
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0) 29 1.1
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 29 1.1
SB_35531| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13) 27 4.6
SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45) 27 4.6
SB_47446| Best HMM Match : DUF16 (HMM E-Value=4.1) 27 6.0
>SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004)
Length = 114
Score = 83.4 bits (197), Expect = 5e-17
Identities = 37/55 (67%), Positives = 45/55 (81%)
Frame = +1
Query: 196 DRLRAVFSEVVTVDVLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDA 360
++L V+ + TVD LDS+D A+LALL RPELGITFTKI CWNLT Y+KCVF+DA
Sbjct: 2 EQLLRVWDHLETVDPLDSQDDANLALLSRPELGITFTKIRCWNLTHYQKCVFMDA 56
>SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 58.8 bits (136), Expect = 1e-09
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Frame = +1
Query: 103 GALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRDAAHL----A 270
GAL +AHSLR + + V ++TP V+ R LR V+ +V+ V + + L +
Sbjct: 9 GALAVAHSLRMVQTKHDLVCMVTPDVTNPTRRHLRVVYDDVIEVPYIRQKCRLFLSPDQS 68
Query: 271 LLQRPELGITFTKIHCWNLTQYEKCVFLDA 360
+ + +FTK +C NL QYE+ +F+DA
Sbjct: 69 RMYNDWIEFSFTKWNCLNLVQYERVMFIDA 98
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 51.6 bits (118), Expect = 2e-07
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Frame = +1
Query: 103 GALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRD----AAHLA 270
GAL +A SLR + Y V ++TP V+ R L ++ V+ V + R + +
Sbjct: 274 GALAVAQSLRMVQTKYDLVCMVTPDVTHPTRRHLCVMYDHVIEVPYIQHRCRKLWSEKQS 333
Query: 271 LLQRPELGITFTKIHCWNLTQYEKCVFLDA 360
+ + +FTK +C NL QYE+ +F+DA
Sbjct: 334 RMYDDWIEFSFTKWNCLNLVQYERVMFIDA 363
>SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)
Length = 847
Score = 42.7 bits (96), Expect = 9e-05
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 106 ALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRDAAHLALLQRP 285
A+VL HS++ V + L++ VS+A L V V +D R
Sbjct: 174 AVVLGHSIKTLSCVKKMLVLVSDEVSKASIHALERTGWSVKLVTAMDCRWLERKQGHMPA 233
Query: 286 ELGI--TFTKIHCWNLTQYEKCVFLD 357
GI T T+ H WN TQY K ++ D
Sbjct: 234 SKGILGTHTRFHAWNYTQYSKIIYAD 259
>SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09)
Length = 347
Score = 41.9 bits (94), Expect = 1e-04
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +1
Query: 103 GALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLD----SRDAAHLA 270
GAL +AHSLRR + + V ++TP V+ + L V+ V+ V + +
Sbjct: 62 GALAVAHSLRRVETRHDLVYMVTPDVTHSTYRHLCVVYDHVIEVQYIQHPCRRLKSEKQQ 121
Query: 271 LLQRPELGITFTKIHCWNLTQYEKCVFLDA 360
+ + +FTK +C L YE+ +F+DA
Sbjct: 122 RMYNDWIESSFTKWNCLKL-DYERVLFIDA 150
>SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)
Length = 310
Score = 41.1 bits (92), Expect = 3e-04
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +1
Query: 100 LGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRDAAHLALLQ 279
L ALVL +SL++ +A ++ V+ R+ LR V EV + LD +
Sbjct: 103 LPALVLGYSLQKFSCQKNMIAFVSEDVTSQTREALRKVGWEVQQHERLDCDWLQRKLGKK 162
Query: 280 RPELGI--TFTKIHCWNLTQYEKCVFLD 357
G T T+ H W TQ+ K V+LD
Sbjct: 163 ETHEGYIGTHTRFHAWGFTQFSKIVYLD 190
>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
Length = 2822
Score = 29.5 bits (63), Expect = 0.85
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 178 VSEAMRDRLRAVFSEVVTVDVLDSRDAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLD 357
V E R+R+R ++ T+ ++RD LL R ++ + W+ T E C+ D
Sbjct: 1751 VGEQARERIRRLWEPTYTITYREARDPNDQELLDREKVRESSESPIQWSSTYMEHCLGTD 1810
>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1492
Score = 29.1 bits (62), Expect = 1.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 298 TFTKIHCWNLTQYEKCVFLD 357
T T+ H WN T Y K ++ D
Sbjct: 1169 THTRFHAWNYTHYRKIIYAD 1188
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 29.1 bits (62), Expect = 1.1
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 CRLEVT*TVTRDYTRLHNVKSS-MGNSGHKRLLRLGALVLAHSLRRAGSVYPAVALITPT 177
C LE+ ++ D T + ++S + + H L ++ ++ L + +VYP V ITP
Sbjct: 623 CTLELIASINGDVTNSNGPRTSRVIQAQHGPLTVTLSISVSLLLTKWQAVYPMVR-ITPA 681
Query: 178 VSEAMRDRLRAVFSEVVTVDVLDSR 252
EA+ + F+ ++ DVL +R
Sbjct: 682 YCEAVLSNQTSFFALLIDKDVLYTR 706
>SB_35531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -2
Query: 124 NGPAPELPSVGVVCAQSYPCSI*HYEAGCSLV*QFKSP 11
NGP P L G +C + PC Y + C L K P
Sbjct: 76 NGPRPTLAIAGYLCTLNGPCL---YISNCQLFMYVKRP 110
>SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)
Length = 899
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 230 VTTSEKTARRRSLIASLTVGVMSATAG 150
V TS K +RRRS I+ +ATAG
Sbjct: 693 VVTSSKPSRRRSSISQAAAAFAAATAG 719
>SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)
Length = 443
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = -3
Query: 231 RDYFGENC-AKTIPHSFTDGR--CD-ECYGRVHRTG 136
RDY+G NC IP T G CD + GRV R G
Sbjct: 11 RDYYGPNCTTHCIPRDGTSGHYTCDLKTGGRVCRPG 46
>SB_47446| Best HMM Match : DUF16 (HMM E-Value=4.1)
Length = 371
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 192 HSFTDGRCDECYGRVHRTGAAERM-GQHQSSQA*ESFVPRVTHA 64
+S TDG DE R+HR + G H + + P VTH+
Sbjct: 177 YSVTDGNIDERDNRMHRQEPEGGISGSHATPDTTQPVKPGVTHS 220
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,232,293
Number of Sequences: 59808
Number of extensions: 183301
Number of successful extensions: 564
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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