Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0592
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   7.0  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   7.0  
SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomy...    25   9.2  

>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 132 ESQLKFTIWKKYHNKKLLQLFQ 67
           ++Q+K  IW+ YH++ LL+ FQ
Sbjct: 288 DNQIK--IWEVYHDRSLLRTFQ 307


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 111 IWKKYHNKKLLQLFQCTKHN*SSIKNIELMMLI 13
           +W+  H   LL L QC + N S+  N+   +LI
Sbjct: 3   VWESQHFSALLYLLQCIESNPSN-PNVSSRLLI 34


>SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 152

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 588 TRSLEEHERLRFRQFPLSRLTRDKTQCTLRLSVYYLCFKT 469
           TR+ E H+       P+  LT D+T   L +S YY  + T
Sbjct: 99  TRAAETHQEFMEVPPPIRGLTYDETYKKLIMSWYYAGYYT 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,539
Number of Sequences: 5004
Number of extensions: 37919
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)