Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0592
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)                28   5.6  
SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_53128| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.1)             27   9.7  
SB_18843| Best HMM Match : I-set (HMM E-Value=1e-07)                   27   9.7  

>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
          Length = 890

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 558 RFRQFPLSRLTRDKTQCTLRLSVY 487
           R R++PLS +TRD  + +L L VY
Sbjct: 741 RSRRYPLSHVTRDTVEQSLALHVY 764


>SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 558 RFRQFPLSRLTRDKTQCTLRLSVY 487
           R R++PLS +TRD  + +L L VY
Sbjct: 217 RSRRYPLSHVTRDTVEQSLALHVY 240


>SB_53128| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.1)
          Length = 310

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 579 LEEHERLRFRQFPLSRLTRDKTQCTLR 499
           + +H   R  Q    R+T+D TQCT++
Sbjct: 2   ITQHATQRITQHATQRITQDATQCTIQ 28


>SB_18843| Best HMM Match : I-set (HMM E-Value=1e-07)
          Length = 339

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 126 GSPEKSNIVAYINNNINKIYLTQLIKDKYHFQFSFRYRYLHF 251
           G+P KS I+ Y++   + IYL + I +   F +     YL F
Sbjct: 117 GTPPKSYIILYVSGVADLIYLDKYIDEDARFTWQSN-NYLEF 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,528,866
Number of Sequences: 59808
Number of extensions: 238723
Number of successful extensions: 395
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)