Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0592
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77855.1 68414.m09073 hypothetical protein                          29   2.6  
At1g22030.1 68414.m02756 expressed protein                             29   3.4  

>At1g77855.1 68414.m09073 hypothetical protein
          Length = 317

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 603 FYPFLTRSLEEHERLRFRQFPLSRLTRDKTQCTLRLSVYYLCFKTDKL 460
           FY FL RS+E+ ER+      +S     +  C LR S  +L     KL
Sbjct: 12  FYSFLNRSMEDLERVYISNNFMSLQFLQRVICLLRTSHSHLTLLVQKL 59


>At1g22030.1 68414.m02756 expressed protein
          Length = 333

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 603 FYPFLTRSLEEHERLRFRQFPLSRLTRDKTQCTLRLSVYYLCFKTDKL 460
           FY FL RS+E+ ER+      +S     +  C LR S  +L     KL
Sbjct: 12  FYSFLNRSMEDLERVYLSNNFMSVHFLQRALCLLRTSHSHLTLLVQKL 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,318,149
Number of Sequences: 28952
Number of extensions: 172160
Number of successful extensions: 303
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)