Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0591
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    36   0.003
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    29   0.57 
SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       28   0.99 
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    26   3.0  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   3.0  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   4.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   5.3  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   5.3  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   7.0  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   7.0  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   7.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   7.0  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    25   7.0  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   9.2  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   9.2  
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   9.2  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = +2

Query: 239 RMDDEFLIRFLRARNFIPQKAHRLLVNYYQFRAE--NPDLFENIHPMDLHAIGDADIMTV 412
           R+DD  L+RFLRAR F  Q++  + +   ++R E    DL +N H  +  A+        
Sbjct: 47  RLDDATLLRFLRARKFNLQQSLEMFIKCEKWRKEFGVDDLIKNFHYDEKEAVSKY-YPQF 105

Query: 413 PPYRGPDGRRLIIYKFGNWDPKTI 484
                 DGR + + + GN D K +
Sbjct: 106 YHKTDIDGRPVYVEQLGNIDLKKL 129


>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -1

Query: 230 YIHRAHKSCPLVRRWLEVEYWGPRRNADERSLGSLAGARRGPSPRCNPESACRTLK 63
           +I  + K   L+    E+EYWG R      S G++AG   G +        C  +K
Sbjct: 72  WIEASTKGAVLLFTSAELEYWGRRLGLGATSAGAIAGMGGGVAQAYATMGFCTCMK 127


>SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +2

Query: 5   RHEGEQLSCAPALIFKQSRI*ASDMPTPDYSVDLDLGEPPPEIQDYARQHCGEDPNTRLQ 184
           RHE E LS  P+L+F+ S + +   P      +L   +  P + +       ED +T   
Sbjct: 15  RHEPEMLSEYPSLMFEHSYLASPSSPIDQVHDELKHSQKRPRLTNDEETIPEEDDSTVRL 74

Query: 185 AIYELRDMI 211
              EL D +
Sbjct: 75  TDSELEDPV 83


>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 334 SELIVVYEQSMSFLWYEISSTKESNQE 254
           SE++ V+ Q ++ LW E  S+ + N+E
Sbjct: 53  SEILDVFTQHIATLWPETQSSDQENEE 79


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 434 HRVRGTVV-PS*Y--LRPRWREDP*DECSRTNPDSL 336
           H V G V+ P+    L P WR+DP + C+    D +
Sbjct: 134 HSVSGAVIQPTALDELLPNWRDDPPENCTAVTHDKM 169


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 182 QAIYELRDMIYERGECTPHRMDDEFLIRFLRARNFIPQKAHRLLVNYYQ-FRAENPDL 352
           Q IY +  +    G       +D+FL+RF         ++H L  N Y  F  + PD+
Sbjct: 374 QWIYAVTQVTDALGNSQQFPSNDQFLLRFAHGYTEADGESHSLPENVYSVFVHQRPDI 431


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -2

Query: 400  ICVPDGVKIHRMNVLEQIRILCSELIVVYEQSMSFLWYE---ISSTKESNQEFIIHPVRG 230
            + + D +K H   ++EQ R++  ELI       + LW+E       + S   F  H + G
Sbjct: 1794 LAIMDSLKTHSPRLVEQARLVSHELI-----RAAILWHEQWHEGLEEASRLYFGDHNIEG 1848

Query: 229  TFTAL 215
             F  L
Sbjct: 1849 MFAVL 1853


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 448 NESAPIGSAVRWYRHDICVPDGVKIHRMNVLEQ 350
           N+  PIG +  W  HD  +P+G  + R  +L Q
Sbjct: 354 NKFIPIGGS--WVEHDTNIPNGESLIRQFLLGQ 384


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 365 HPMDLHAIGDADIMTVPPYRGPDGRRLIIYKFGNWDPKTI 484
           +P D   +G  D  T+ PYR P    LI  +     PK I
Sbjct: 448 NPHDWPQVGSYD--TISPYRNPVNSHLIYSQIQQSSPKKI 485


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 385 GVKIHRMNVLEQIRILCSELIVVYEQSMSFLW 290
           G K   MNV   I+ LCS+ + V     S LW
Sbjct: 145 GYKYPDMNVFFSIKTLCSKSLAVCFSVASGLW 176


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 176 RLQAIYELRDMIYERGECTPHRMDDEFLIRFLRARNFIPQKAHRLLVNYYQFRAE 340
           R Q   E R+      +C      D  L+RFL + N    +A + L+N  Q+R +
Sbjct: 59  RFQEHKEYRESFIRLAKCDS---PDAILVRFLASCNNDSHEASQKLINTLQWRVD 110


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -2

Query: 193  VDGLKSSIGVLAAMLTSVVLDLWRGLAEVQVHAVIRSRHVGRLNSTLFEYERGRTTQLLA 14
            V+ L +S+  L   +  +  ++    A + +     SR   R  S L +YER   TQL  
Sbjct: 1297 VEKLNASLNPLQTEINELKAEIGAKTASLNLMKEYNSRWKLRFQSVLNKYERVDPTQLEE 1356

Query: 13   LVPN 2
            L  N
Sbjct: 1357 LKKN 1360


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +2

Query: 365 HPMDLHAIGDADIMTVPP----YRGPDGRRLIIYKFGNWDPK 478
           H  ++  + D+D+   PP     +GP GR +++ +  N + K
Sbjct: 133 HSKNMQVVTDSDVRKDPPRKGWKKGPYGRAIVVLRMYNKNTK 174


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 286 EISSTKESNQEFIIHPVRGTFTALINHVP*FVDGLKSSIGVLAAMLTSVV 137
           E++   +   E II P   TF   + H+P +V G+K+S G+L    + V+
Sbjct: 798 EVTCLYDDIHEGII-PAYNTF---VEHLPSWVAGVKASTGLLKVKSSIVI 843


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 295 LWYEISSTKESNQEFIIHPVRGTFTALINHVP 200
           L Y ISS   +  +F  H VRG   A+ + VP
Sbjct: 58  LVYSISSNLHTPTQFTGHKVRGRRGAVASEVP 89


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +2

Query: 179 LQAIYELRDMIYERGECTPHRMDDEFLIRFLRARNFIPQKAHRL 310
           ++  Y   D   +R +   HR+DD+ +++ +   + I +K  R+
Sbjct: 75  IKLYYNFMDGFNKRTDTLQHRVDDKKILKTIEKWSCIKEKLRRV 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,198
Number of Sequences: 5004
Number of extensions: 46258
Number of successful extensions: 133
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)