Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0591
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41749-6|AAB52487.2|   90|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U39647-1|AAA80375.2|  351|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z79753-3|CAB02088.1|  377|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical ...    27   6.3  

>U41749-6|AAB52487.2|   90|Caenorhabditis elegans Hypothetical
           protein F09E10.1 protein.
          Length = 90

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 194 RRWLEVEYWGPRRNADERSLGSLAGARRGPSPRCNP 87
           + WL+   WGP ++     L      RR P+  C P
Sbjct: 39  KNWLKNGRWGPTQHPGHEELDRPPNGRRAPTVACEP 74


>U39647-1|AAA80375.2|  351|Caenorhabditis elegans Hypothetical
           protein C44E12.1 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 353 FENIHPMDLHAIGDADIMTVPPYRGPDGRRLIIYKFGNWDPKTICVEELFKATILS 520
           F N  P  +  + +  + TVPPY  P      IY  G+ D K      +  ATI+S
Sbjct: 61  FRNSDPKHVKVLLNTHLDTVPPYFPPTQDEQNIYGNGSNDAKGQLAAMVTAATIIS 116


>Z79753-3|CAB02088.1|  377|Caenorhabditis elegans Hypothetical
           protein F20G2.3 protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +2

Query: 185 AIYELRDMIYERGECTPHRMDDEFLIRFLRARNFIPQKAHRLLVNYYQFRAENPDL 352
           AI ELR+ + E    TP+   D  L+R+L+  ++        L+N+  FR  + DL
Sbjct: 10  AINELREAVKEH--LTPYYDTDFNLLRWLKGHDYKMDVIKPKLINHLLFRKSDWDL 63


>AC006617-1|AAF39770.2|  397|Caenorhabditis elegans Hypothetical
           protein C39B5.6 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 254 IHHPSCEGYIHRAHKSCPLVRRWLEVEYWGPR 159
           IHH  C+G +HR H          + + WG R
Sbjct: 95  IHHAICDGELHRGHIRVDANVSLAKDDVWGTR 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,611,444
Number of Sequences: 27780
Number of extensions: 270528
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)