Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0590
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    26   4.3  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   9.9  

>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 439 INDKIFFNICVSFLFFFFKLPPRVSHKMLFQFCHTPSFPSQIPKRRTN 296
           +N + F ++C+S + F  ++ P V    L  F  +  + S   K +TN
Sbjct: 263 LNVRKFVSLCLSLILFENEMGPAVKFGALLVFGSSAVYASARSKPKTN 310


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 394 FFFKLPPRVSHKMLFQFCHTPS 329
           F F L   VSH   FQF  TPS
Sbjct: 122 FLFALESVVSHHSRFQFSLTPS 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,014
Number of Sequences: 5004
Number of extensions: 18684
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)