Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0590
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61690.1 68418.m07740 ABC transporter family protein ABC tran...    30   1.2  
At1g32050.1 68414.m03943 secretory carrier membrane protein (SCA...    30   1.2  
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ...    29   2.8  
At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to ...    28   4.8  

>At5g61690.1 68418.m07740 ABC transporter family protein ABC
           transport protein, Dictyostelium discoideum, PIR:T18288
          Length = 954

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 191 NTTEIIFENIFLVFLSIFRFVLSIIFNVLVPRACWVRSPFW 313
           N   II++ +   FL  F FVL+I F+ ++P A  VR P +
Sbjct: 405 NRANIIYQWLLGTFL--FWFVLAIYFDNIIPNASGVRKPIF 443


>At1g32050.1 68414.m03943 secretory carrier membrane protein (SCAMP)
           family protein contains Pfam domain, PF04144: SCAMP
           family
          Length = 264

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 221 FLVFLSIFRFVLSIIFNVLVPRACWVR 301
           +L F S    VL ++FNV+    CW++
Sbjct: 118 YLAFASWLGIVLCLVFNVIATMVCWIK 144


>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
           SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
           (NR2) {Arabidopsis thaliana}
          Length = 917

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 296 VRSPFWNL*RKTRSMAELKKHLMTNSRW 379
           V +PF N   K  SM+E+KKH   +S W
Sbjct: 533 VSTPFMNTTAKMYSMSEVKKHNSADSCW 560


>At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to
           SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1)
           (NR1){Arabidopsis thaliana}
          Length = 917

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 296 VRSPFWNL*RKTRSMAELKKHLMTNSRW 379
           V SPF N   K  S++E++KH   +S W
Sbjct: 536 VSSPFMNTASKMYSISEVRKHNTADSAW 563


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,956,434
Number of Sequences: 28952
Number of extensions: 87625
Number of successful extensions: 219
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)