Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0587
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    27   2.7  
SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces ...    26   4.7  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   6.2  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   6.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   8.1  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.1  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   8.1  
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    25   8.1  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   8.1  

>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +2

Query: 212 IWRETISSTSTLGFRIDGVKKADGTSSKDFKTTKTRQQIAEAFKDFTSSCPNAAVRYL 385
           I +E  S  + LG  +D VKK     SK  +T  +  Q+  AF+++ S+ P   V+YL
Sbjct: 239 ILQELDSLCNCLGSSLD-VKKL----SKQRETLLSHMQVNPAFREYRSNRPVEIVQYL 291


>SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 248 GFRIDGVKKADGTSSKDFK--TTKTR-QQIAEAFKDFTSSCPNAAVRYLERLRSIR 406
           G  + G  + +    K+F   T KT  +QIAEAF D+T+   + A+  + +  + R
Sbjct: 23  GMLLAGTGQVNENGDKNFFIITQKTTDEQIAEAFDDYTTKRKDIAIVLINQFAAER 78


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 509 FAKTVPVPENVSID 550
           F KT+ +PEN+SID
Sbjct: 836 FRKTIIIPENISID 849


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 335  AFKDFTSSCPNAAVRYLERLRSIRATLTESHFFRTHELIGSSLLF 469
            A K  +S+  NAA+  ++ L++    L E     +HELI +++L+
Sbjct: 1781 AAKSQSSARQNAALAIMDSLKTHSPRLVEQARLVSHELIRAAILW 1825


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 425  HFFRTHELIGSSLLFVH----DKRKASIWMIDFAKTVPVP 532
            HF+   +++  S L V+    +KRK    +ID A  +P+P
Sbjct: 1035 HFYEDPQIVACSSLGVYHSIFNKRKFDYCIIDEASQIPLP 1074


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 185 LLLCSSSEGAFGSIWIIFSYISFLNLVFSFALANSSS 75
           L+  SSS  +    W  F+Y+  L +V  F L   SS
Sbjct: 94  LVYPSSSFSSTSKFWRYFAYLLSLQIVIDFVLYKLSS 130


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 19/81 (23%), Positives = 33/81 (40%)
 Frame = -3

Query: 411 VARMLLSLSKYLTAAFGQLLVKSLKASAICCLVFVVLKSLELVPSAFFTPSILKPKVEVE 232
           VAR   SL++          +  L AS++CC++  ++    L    F T  +LK  +   
Sbjct: 23  VARPRPSLNRNDPKVITARCISVLLASSVCCILTRLIIGPSLNVFTFPTDQVLKSLLHAA 82

Query: 231 LIVSLQIMYPWLRDSFTSVLF 169
            I    +   W+ D    + F
Sbjct: 83  TIFIGPLYEVWIVDKEYRLFF 103


>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 4   EFGTRAISIVPGVMDCKIGVR 66
           EFGT+ ++IVPG +  ++  R
Sbjct: 80  EFGTKILAIVPGRVSTEVDAR 100


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
            factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 279  SAFFTPSILKPKV 241
            S FFTP IL PKV
Sbjct: 966  STFFTPEILSPKV 978


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,482
Number of Sequences: 5004
Number of extensions: 44353
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)