Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0587
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064)                 29   3.7  
SB_15844| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-23)                 27   8.5  

>SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064)
          Length = 538

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = -3

Query: 453 PISSCVLKK*DSVSVARMLLSLSKYLTAAFGQLLVKSLKASAICCLVFVVLKSLELVPSA 274
           PI S +  K +   V  +L+SLS +L A F Q +V S    A C        S+ L  + 
Sbjct: 102 PIWSAIADKYNKYKVV-LLMSLSFWLIATFSQAIVPSTVQPAAC----YRFNSIHLYANK 156

Query: 273 FFT--PSILKPKVEVELIVSLQIMYPWLRDSFTS 178
            +T  PS   P      +  +  ++PW    F S
Sbjct: 157 SYTNPPSPPDPD-HYHRVFGVSNLFPWALGLFRS 189


>SB_15844| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-23)
          Length = 343

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -3

Query: 471 TNNNELPISSCVLKK*DSVSVAR--MLLSLSKYLTAAFGQLLVKSLKASAICCLVFVV 304
           T  NE+ I+S V  K  S+  A   +L+++ +YL   +     + ++   +CC++ +V
Sbjct: 86  TGLNEVCITSAVSLKFVSIVSALHILLMTVDRYLFIVYAHKYYEMVRKGRVCCVLLLV 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,984,984
Number of Sequences: 59808
Number of extensions: 328264
Number of successful extensions: 899
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)