Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0586
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   3.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.6  

>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 93  QIDSYLRVLLPFCIFNQSCYLFLKPSCRIP 4
           +ID Y+R     C   +   + ++P C +P
Sbjct: 27  EIDMYMRRKCQECRLKKCLTVGMRPECMVP 56


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 93  QIDSYLRVLLPFCIFNQSCYLFLKPSCRIP 4
           +ID Y+R     C   +   + ++P C +P
Sbjct: 230 EIDMYMRRKCQECRLKKCLTVGMRPECVVP 259


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 63 PFCIFNQSCYLFLK 22
          P+C  N SCY  LK
Sbjct: 9  PYCRRNFSCYYSLK 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,525
Number of Sequences: 438
Number of extensions: 3581
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)