Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0585
         (525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    29   1.4  
At2g37940.1 68415.m04657 expressed protein                             28   4.4  
At1g17120.1 68414.m02086 amino acid permease family protein low ...    28   4.4  
At5g35735.1 68418.m04276 auxin-responsive family protein similar...    27   5.8  
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ...    27   7.7  
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ...    27   7.7  

>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1355

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 316  YIKLKKLRLNIFWNVFAFEINYVFVLIYFFIILQNFVLRDAQDK 447
            Y ++  +R+   W+V+AF + Y+F+L    I+   F+LRD   K
Sbjct: 1316 YDEMNGVRIIPIWHVYAFLLIYLFLL----ILKSRFILRDVIHK 1355


>At2g37940.1 68415.m04657 expressed protein
          Length = 305

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +1

Query: 220 FFLLPAL*NEQYLTNQK--TNALFSMFFFLY*INYIKLKKLRLNIFW-NVFAFEINYVFV 390
           FFLLP L  E+   ++   T+   S F + +    +K KK+   + W  V AF +   F+
Sbjct: 66  FFLLPELGQERSYISETVFTSVFLSFFLWTFHPFILKTKKIYTVLIWCRVLAFLVACQFL 125

Query: 391 LIYFFIILQ 417
            +  F   Q
Sbjct: 126 RVITFYSTQ 134


>At1g17120.1 68414.m02086 amino acid permease family protein low
           similarity to SP|O43246 Cationic amino acid
           transporter-4 (CAT-4) {Homo sapiens}; contains Pfam
           profile PF00324: Amino acid permease
          Length = 590

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/41 (21%), Positives = 25/41 (60%)
 Frame = +1

Query: 340 LNIFWNVFAFEINYVFVLIYFFIILQNFVLRDAQDKCAILK 462
           L +  +VF+F   ++F+L+   ++++ + ++D   +  +LK
Sbjct: 428 LEVLSSVFSFATLFIFMLVAVALLVRRYYVKDVTPEAGLLK 468


>At5g35735.1 68418.m04276 auxin-responsive family protein similar to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 404

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 349 FWNVFAFEINYVFVLIYFFIILQNFVLRDAQDK 447
           +WNV+   + Y  +++    I + F + D +DK
Sbjct: 309 YWNVYHHTVGYTTIILSIVNIFKGFDILDPEDK 341


>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 289

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 244 NEQYLTNQKTNALFSMFFFLY*INYIKLKK-LRLNIFWNVFAFEINYVFVLIYFF 405
           +E Y +     +LFS   ++Y   Y  +KK   + I  N FAF +  V++ ++FF
Sbjct: 40  SEGYQSIPYVISLFSAMLWMY---YAMIKKDAMMLITINSFAFVVQIVYISLFFF 91


>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 402

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 221 SFSFLPYKTSSI*RIKRLMRYSQCFFFCIK*IIL 322
           S S LP  +SS+  +  +++YS+CF   IK  IL
Sbjct: 55  SRSILPPSSSSLQEVLHIIQYSRCFGATIKNSIL 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,669,938
Number of Sequences: 28952
Number of extensions: 109643
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)