Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0584
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.40
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 29 0.40
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.40
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 29 0.52
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 29 0.52
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 27 2.1
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.7
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 4.9
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 26 4.9
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 6.4
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 25 8.5
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.5
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy... 25 8.5
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 25 8.5
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.5 bits (63), Expect = 0.40
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 151 KPT*VQSVVYKLFN*NDSLSVVCFGSYSRNNRRLWPRKAVIKIWRFDCLRETG-HCGRTQ 327
+ T +Q ++ FN + + + F +YS N+ +W + + IW+ + ETG +C +
Sbjct: 8 RDTVIQKSFFEEFN-SQNREMGSF-AYSGNSESVWTGENITSIWKTILINETGSYCVAAR 65
Query: 328 PSQTD 342
P D
Sbjct: 66 PMTMD 70
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.5 bits (63), Expect = 0.40
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 151 KPT*VQSVVYKLFN*NDSLSVVCFGSYSRNNRRLWPRKAVIKIWRFDCLRETG-HCGRTQ 327
+ T +Q ++ FN + + + F +YS N+ +W + + IW+ + ETG +C +
Sbjct: 8 RDTVIQKSFFEEFN-SQNREMGSF-AYSGNSESVWTGENITSIWKTILINETGSYCVAAR 65
Query: 328 PSQTD 342
P D
Sbjct: 66 PMTMD 70
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 29.5 bits (63), Expect = 0.40
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 151 KPT*VQSVVYKLFN*NDSLSVVCFGSYSRNNRRLWPRKAVIKIWRFDCLRETG-HCGRTQ 327
+ T +Q ++ FN + + + F +YS N+ +W + + IW+ + ETG +C +
Sbjct: 8 RDTVIQKSFFEEFN-SQNREMGSF-AYSGNSESVWTGENITSIWKTILINETGSYCVAAR 65
Query: 328 PSQTD 342
P D
Sbjct: 66 PMTMD 70
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 226 SYSRNNRRLWPRKAVIKIWRFDCLRETG-HCGRTQPSQTD 342
+YS N+ +W + + IW+ + ETG +C +P D
Sbjct: 3 AYSGNSESVWTGENITSIWKTILINETGSYCVAARPMTMD 42
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 350 LGQITKQPPAANMMEMIWDDELAATA 427
+GQIT++ A EMIWD ++A +A
Sbjct: 410 IGQITEKDVARVASEMIWDKDIAVSA 435
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 98 ITSENILYSSYESQLKRENQLKFRVLCINFLIKMIPLV 211
I E + + Y SQL NQ F L LI+MIP++
Sbjct: 65 IGDEPLQKNLYLSQLSVTNQTLFYALISQHLIEMIPII 102
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 130 VTRI*NVLTRNLRNVKLLLLF 68
V ++ NVL RN RN KLL+ F
Sbjct: 549 VIQVKNVLHRNRRNAKLLIAF 569
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = -3
Query: 261 PGPQPSVVARIAPKTNNTKGIILIKKFIHNTLNLSWFSR 145
PG + + +I K N+ +G+IL + +H + ++ R
Sbjct: 889 PGERREIHIKIRAKPNSQEGLILFESSVHKPEDTEFYVR 927
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 200 IPLVLFVLGAILATTEGCGPGKQ 268
+PL+L + A L+T+ GPGK+
Sbjct: 144 VPLILNEMDAFLSTSPDFGPGKE 166
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 512 AATWTTRPPTEPSDSAPDFQKQIN 583
A WTT P T PS+ A + +IN
Sbjct: 258 ALVWTTTPWTIPSNLALSYHPEIN 281
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 336 LRRLCASTMACFS*AVKPPDFNNCFPGPQPSVVARIAPK 220
+RRL ++ + A PDF CF G + +PK
Sbjct: 333 VRRLSTHSLKRINCAAYRPDFEQCFTGDMNGNIYMWSPK 371
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 435 GPINVYPLTTALPNVIWADSLLDRTSQPLGQLVHQLNHPTLRLTSRSK 578
G I++ L + NV WA +++ S PL L++ L R+ +RSK
Sbjct: 465 GFIHLSALMFSRMNVHWATAVVGFASLPLIALIYALYFYGDRIRARSK 512
>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 431 RWSDQCIPAHDRAAQRDL 484
RW D+CI AH R ++L
Sbjct: 173 RWLDRCIQAHKRPETQNL 190
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 8.5
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -2
Query: 532 TSCPSGCEVLSNRESAQITLGSAVVSG-YTLIGPALSSSCQFIVPNHFHHVSCWGLFGNL 356
T+ P + N A++ + SG ++ I P +SS I + FH V+C+ +
Sbjct: 182 TAKPPASVIEFNPSLAKLPTVKYLQSGPFSSIAPYKNSSSSVIPDSSFHSVACYRASSHY 241
Query: 355 SESN-SLSETVVCVHNGLFLVSSQT 284
E+ S + + N L L+ +
Sbjct: 242 KEAPVEKSIDIDIIQNNLSLLEEDS 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,704
Number of Sequences: 5004
Number of extensions: 53160
Number of successful extensions: 163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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