Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0584
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)                   31   0.72 
SB_17270| Best HMM Match : ABC_tran (HMM E-Value=5.1e-08)              30   1.7  
SB_8808| Best HMM Match : SCP (HMM E-Value=0.036)                      30   1.7  
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)                   29   3.8  
SB_22900| Best HMM Match : DUF1399 (HMM E-Value=0.00019)               29   3.8  
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)                 28   5.1  
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_58571| Best HMM Match : PLAT (HMM E-Value=1.2e-22)                  28   6.7  
SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_168| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.7  
SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_4159| Best HMM Match : Vpu (HMM E-Value=2)                          27   8.8  

>SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)
          Length = 631

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
 Frame = +2

Query: 275 KSGGLTAYEKQAIVDAHNRLRQTVALGQITKQPPAANMMEMIWDDELAATAQRWSDQCIP 454
           K G ++ +EK+ + DAHN  R    +      PP      + W+ EL   AQ W+D    
Sbjct: 201 KPGQMSGFEKECL-DAHNMYRMRHGV------PP------LTWNSELTRDAQSWADTLAR 247

Query: 455 AHDRAAQRDLGRFPVGQNLA-ATWTTRPPTEPSD-SAPDFQKQINAWFDEV 601
            +       L     G+NLA      R    P D +     + +  W+DE+
Sbjct: 248 ENKFEHHPALKELGQGENLAYFAPANRKCDGPEDTNCVHCGEIVKDWYDEI 298


>SB_17270| Best HMM Match : ABC_tran (HMM E-Value=5.1e-08)
          Length = 771

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +2

Query: 116 LYSSYESQLKRENQLKFRVLCINFLIKMIPLVL-FVLGAI 232
           L++ + +  +REN+L FR+L   FL +M+ LV   +LGA+
Sbjct: 509 LFAQFLTFYRRENRLLFRILRTLFLDQMMVLVAGLILGAL 548


>SB_8808| Best HMM Match : SCP (HMM E-Value=0.036)
          Length = 88

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 23/76 (30%), Positives = 33/76 (43%)
 Frame = +2

Query: 287 LTAYEKQAIVDAHNRLRQTVALGQITKQPPAANMMEMIWDDELAATAQRWSDQCIPAHDR 466
           +T +EK+ + DAHN  R    +      PP      M W  +LA  AQ W+D     +  
Sbjct: 1   MTGFEKECL-DAHNMYRARHGV------PP------MTWSRDLARDAQSWADTLARENKF 47

Query: 467 AAQRDLGRFPVGQNLA 514
                L +   G+NLA
Sbjct: 48  EHDSSLKKLGEGENLA 63


>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1164

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +1

Query: 394  NDLGR*IGSYCSTLVRSMYTRS----RPRCPT*FGQIPCWTEPRSH 519
            N LG   G+   ++ R +Y  S    RPRCP   GQ P  + P+ +
Sbjct: 985  NTLGAIAGTVNQSMSRCLYAESARTRRPRCPPGSGQTPGRSSPKGN 1030


>SB_22900| Best HMM Match : DUF1399 (HMM E-Value=0.00019)
          Length = 696

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 229 YSRNNRRLWPRKAVIKIWRFDCLRETGHCGRTQPSQTD 342
           Y   N     RKA++ +++FD L+  G  G +    TD
Sbjct: 365 YETANSVFTTRKALVGLFKFDTLKHLGRYGESMTQSTD 402


>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
          Length = 1065

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -2

Query: 538 WWTSCPSGCEVLSNRESAQITLGSAVVSGYTLIGPALSSSCQFIVPN 398
           W  SC + C   SN  S+ +TLG         +   L S C F + N
Sbjct: 395 WEGSCNAICTRTSNATSSCVTLGDQCHCPNVTLPKPLVSKCTFTITN 441


>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1249

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -2

Query: 511 EVLSNRESAQITLGSAVVSGYTLIGPALSSSCQ-FIVPNHF--HHVSCWGLFGNLSESNS 341
           + L+NR       G+ V+SG+  +   L ++C+  IV NH+  H      L   + +S S
Sbjct: 296 KALANRLPGGFLPGTDVISGFLFVCRQLWTTCEGLIVINHYSLHEYVADALSKAIKDSPS 355

Query: 340 LSET 329
           +S T
Sbjct: 356 MSAT 359


>SB_58571| Best HMM Match : PLAT (HMM E-Value=1.2e-22)
          Length = 651

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = -2

Query: 517 GCEVLSNRESAQITLGSAVVSGYTLIGPALSSSCQFIVPNHFHHVSCWGLFGNLSESNSL 338
           GCEV+  R S + T+ S   + +T  G        F+ PN  +    +  F NLS++ ++
Sbjct: 290 GCEVIE-RSSPRTTICSC--NHFTTFGSGF-----FVAPNPINFSEAFKGFSNLSDNPAV 341

Query: 337 SETVVCVHNGLFLV 296
              VV V  GL+++
Sbjct: 342 FSVVVSV-IGLYII 354


>SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1328

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 299  EKQAIVDAHNRLRQTVALGQITKQPPAANMMEMIWDDELAATAQRW 436
            E +  + A N+ +    L Q    PPAA+ M  IW+  + +  QRW
Sbjct: 1165 ELREAIGAWNQQKIANFLTQRGINPPAASHMGGIWERVIRSERQRW 1210


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +3

Query: 453  PLTTALPNVI----WADSLLDRTSQPLGQLVHQLNHPTL 557
            P+   +PNV     W+  L +R ++P+  L   LNH TL
Sbjct: 1177 PINKNMPNVAGSLKWSSELKERITKPMQALKLSLNHGTL 1215


>SB_168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -2

Query: 511 EVLSNRESAQITLGSAVVSGYTLIGPALSSSCQ-FIVPNHF--HHVSCWGLFGNLSESNS 341
           + L+NR       G+ V+SG+  +   L ++C+  IV NH+  H      L   + +S S
Sbjct: 14  KALANRLPGGFLPGTDVISGFLFVCRQLWTTCEGLIVINHYSLHEYVADALSKAIKDSPS 73

Query: 340 LSET 329
           +S T
Sbjct: 74  MSAT 77


>SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 407 DELAATAQRWSDQCIPAH 460
           DELA+T QR  D+ IP H
Sbjct: 477 DELASTVQRLEDKVIPVH 494


>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
          Length = 779

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 297 TRNRPLWTHTTVSDRLLLSDKLPNSPQQLT*WK*FGTMNWQLLLNAGPINVYPLTTALP 473
           T  R  W+ T V+  L L D  P     +T     G ++ + L   GP+++ PLTT  P
Sbjct: 85  THYRANWSSTAVAAALELVDP-PGCRNSIT----GGPVSMEPLTTGGPVSMEPLTTGGP 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,643,910
Number of Sequences: 59808
Number of extensions: 408629
Number of successful extensions: 1195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)