Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0583
(506 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 134 4e-32
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 128 2e-30
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 102 1e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 91 5e-19
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 52 3e-07
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 36 0.015
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.034
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 34 0.059
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 34 0.077
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 0.20
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 32 0.24
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.3
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 29 2.9
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 27 6.7
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 27 6.7
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 134 bits (324), Expect = 4e-32
Identities = 57/121 (47%), Positives = 86/121 (71%)
Frame = +3
Query: 144 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 323
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 324 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 503
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 504 I 506
+
Sbjct: 286 V 286
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 128 bits (310), Expect = 2e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +3
Query: 204 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 383
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 102 bits (245), Expect = 1e-22
Identities = 46/77 (59%), Positives = 59/77 (76%)
Frame = +3
Query: 276 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 455
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 456 TREHALLAFTLGVKQLI 506
TREHA+L +LGV QLI
Sbjct: 61 TREHAILVRSLGVTQLI 77
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 91.1 bits (216), Expect = 5e-19
Identities = 40/47 (85%), Positives = 45/47 (95%)
Frame = +3
Query: 66 RKRRHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 206
+++ HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 3 KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/117 (25%), Positives = 54/117 (46%)
Frame = +3
Query: 72 RRHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 251
+R +I H D+GK+T T L+ G I +EA + K D ++
Sbjct: 8 KRRRTFGIISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFME 58
Query: 252 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 422
ER+RGI++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 59 IERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.015
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +3
Query: 84 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 263
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 264 RGITI 278
RGIT+
Sbjct: 1987 RGITV 1991
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 36.3 bits (80), Expect = 0.015
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Frame = +3
Query: 84 NIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 257
N+ VI HVD GKST T L+ K G I K +F ++ L E
Sbjct: 20 NMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKSTAISLYYE 79
Query: 258 RERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 422
I K + + + +ID+PGH DF + D A+++V +G
Sbjct: 80 LPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 35.1 bits (77), Expect = 0.034
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Frame = +3
Query: 81 INIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLDKL 248
I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 113 IRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGFSC 172
Query: 249 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAGTG 422
E A E S +T ID GH ++K I G + D A+L++A G
Sbjct: 173 TGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGNAG 232
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 34.3 bits (75), Expect = 0.059
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Frame = +3
Query: 81 INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 233
+ + V+G+VD+GKST T G L G +R K E E+ +G +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289
Query: 234 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 374
+ + G +D A E+SK +T ID GH ++K I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 33.9 bits (74), Expect = 0.077
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Frame = +3
Query: 78 HINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 251
+ NI V+GHVDSGK++ L DK + ++G SF+ A + + L
Sbjct: 35 NFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA-LPEHL- 92
Query: 252 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 431
R G D+ +T++D PGH IK +I G A +I GT E
Sbjct: 93 --RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG------AQIIGECGT--IE 133
Query: 432 AGISKNGQTR 461
G ++G+ +
Sbjct: 134 GGFGQSGKVK 143
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 318 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 422
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 30.7 bits (66), Expect(2) = 0.20
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 243 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 410
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96
Score = 20.6 bits (41), Expect(2) = 0.20
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 63 ARKRRHINIVVIGHVDSGKST 125
A+ R IGHV GKST
Sbjct: 17 AKLRASAQARTIGHVAHGKST 37
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 32.3 bits (70), Expect = 0.24
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 267 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 413
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 324 IIDAPGHRDFIKNMITGTSQADCAVLIV 407
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 269 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 129
TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 269 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 129
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 437 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 278 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 129
D TT+T S YPS+ + +F D T N TT V +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 269 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 129
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 269 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 129
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = -1
Query: 395 SAISLRGSCDH-VLDEISVSRSIN-DGNIVLA---SFELPESNIDCDTTLTLSL*FVQYP 231
SAIS S + ++ ++ S +N N +A + +++ TT+T S YP
Sbjct: 993 SAISTTSSIESTIMASVASSIQLNITSNTTMAVNDTLRTASTSVVFPTTITPSPNITSYP 1052
Query: 230 SIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 129
S+ + + +F D T N T V +++
Sbjct: 1053 SLMKSAVGNFTSATSVVFDSTTPNATRLVPSISA 1086
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 269 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 129
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 18 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 269 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 129
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 420 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,055,020
Number of Sequences: 59808
Number of extensions: 301428
Number of successful extensions: 726
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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