Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0583
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 270 3e-73
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 270 3e-73
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 270 3e-73
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 270 3e-73
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 161 2e-40
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 160 4e-40
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 95 2e-20
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 87 6e-18
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 56 1e-08
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 56 1e-08
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 52 2e-07
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 50 7e-07
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 50 9e-07
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 44 4e-05
At5g13650.1 68418.m01584 elongation factor family protein contai... 41 6e-04
At5g13650.2 68418.m01585 elongation factor family protein contai... 40 7e-04
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 39 0.002
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 37 0.009
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 37 0.009
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.15
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 32 0.19
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 32 0.19
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 32 0.26
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 32 0.26
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 31 0.59
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 1.0
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 1.0
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 1.4
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 29 1.8
At4g20430.1 68417.m02981 subtilase family protein contains Pfam ... 27 7.3
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c... 27 9.6
At5g27540.1 68418.m03297 GTP-binding protein-related low similar... 27 9.6
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 27 9.6
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 27 9.6
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 27 9.6
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 27 9.6
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 27 9.6
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 270 bits (663), Expect = 3e-73
Identities = 127/147 (86%), Positives = 137/147 (93%)
Frame = +3
Query: 66 RKRRHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 245
+++ HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDK
Sbjct: 3 KEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDK 62
Query: 246 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 425
LKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG
Sbjct: 63 LKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG 122
Query: 426 FEAGISKNGQTREHALLAFTLGVKQLI 506
FEAGISK+GQTREHALLAFTLGVKQ+I
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVKQMI 149
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 270 bits (663), Expect = 3e-73
Identities = 127/147 (86%), Positives = 137/147 (93%)
Frame = +3
Query: 66 RKRRHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 245
+++ HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDK
Sbjct: 3 KEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDK 62
Query: 246 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 425
LKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG
Sbjct: 63 LKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG 122
Query: 426 FEAGISKNGQTREHALLAFTLGVKQLI 506
FEAGISK+GQTREHALLAFTLGVKQ+I
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVKQMI 149
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 270 bits (663), Expect = 3e-73
Identities = 127/147 (86%), Positives = 137/147 (93%)
Frame = +3
Query: 66 RKRRHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 245
+++ HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDK
Sbjct: 3 KEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDK 62
Query: 246 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 425
LKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG
Sbjct: 63 LKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG 122
Query: 426 FEAGISKNGQTREHALLAFTLGVKQLI 506
FEAGISK+GQTREHALLAFTLGVKQ+I
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVKQMI 149
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 270 bits (663), Expect = 3e-73
Identities = 127/147 (86%), Positives = 137/147 (93%)
Frame = +3
Query: 66 RKRRHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 245
+++ HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDK
Sbjct: 3 KEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDK 62
Query: 246 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 425
LKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG
Sbjct: 63 LKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG 122
Query: 426 FEAGISKNGQTREHALLAFTLGVKQLI 506
FEAGISK+GQTREHALLAFTLGVKQ+I
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVKQMI 149
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 161 bits (392), Expect = 2e-40
Identities = 71/143 (49%), Positives = 103/143 (72%), Gaps = 1/143 (0%)
Frame = +3
Query: 81 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 260
+N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+ ER
Sbjct: 240 LNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAEER 299
Query: 261 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 440
ERGIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEAG
Sbjct: 300 ERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGF 359
Query: 441 SK-NGQTREHALLAFTLGVKQLI 506
GQTREHA + GV+Q+I
Sbjct: 360 DNLKGQTREHARVLRGFGVEQVI 382
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 160 bits (389), Expect = 4e-40
Identities = 72/148 (48%), Positives = 104/148 (70%)
Frame = +3
Query: 63 ARKRRHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 242
A K+RH+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 96 ANKKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMD 155
Query: 243 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 422
+ ER +G T+++ FET TI+DAPGH+ ++ NMI+G SQAD VL+++A G
Sbjct: 156 TNEEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 215
Query: 423 EFEAGISKNGQTREHALLAFTLGVKQLI 506
EFE G + GQTREH LA TLGV +LI
Sbjct: 216 EFETGYERGGQTREHVQLAKTLGVSKLI 243
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 95.1 bits (226), Expect = 2e-20
Identities = 55/150 (36%), Positives = 79/150 (52%)
Frame = +3
Query: 57 KWARKRRHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 236
K+ RK+ H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE--------------- 116
Query: 237 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 416
+D ER RGITI+ A ++ET + +D PGH D++KNMITG +Q D A+L+V+
Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 176
Query: 417 TGEFEAGISKNGQTREHALLAFTLGVKQLI 506
G QT+EH LLA +GV ++
Sbjct: 177 DGPMP-------QTKEHILLAKQVGVPDMV 199
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 87.0 bits (206), Expect = 6e-18
Identities = 54/149 (36%), Positives = 77/149 (51%)
Frame = +3
Query: 60 WARKRRHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 239
+ R + H+N+ IGHVD GK+T T + K E GK +
Sbjct: 61 FTRNKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEI 105
Query: 240 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 419
DK E++RGITI A ++ET+K + +D PGH D++KNMITG +Q D +L+V+
Sbjct: 106 DKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPD 165
Query: 420 GEFEAGISKNGQTREHALLAFTLGVKQLI 506
G QT+EH LLA +GV L+
Sbjct: 166 GPMP-------QTKEHILLARQVGVPSLV 187
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 56.4 bits (130), Expect = 1e-08
Identities = 41/128 (32%), Positives = 61/128 (47%)
Frame = +3
Query: 84 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 263
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 264 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 443
+GITI A Y V IID PGH DF + D A+L++ + G I+
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSIT 176
Query: 444 KNGQTREH 467
+ Q R +
Sbjct: 177 VDRQMRRY 184
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 56.4 bits (130), Expect = 1e-08
Identities = 41/128 (32%), Positives = 61/128 (47%)
Frame = +3
Query: 84 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 263
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 264 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 443
+GITI A Y V IID PGH DF + D A+L++ + G I+
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSIT 176
Query: 444 KNGQTREH 467
+ Q R +
Sbjct: 177 VDRQMRRY 184
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 52.4 bits (120), Expect = 2e-07
Identities = 37/117 (31%), Positives = 55/117 (47%)
Frame = +3
Query: 72 RRHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 251
R+ NI ++ HVD GK+T HLI GG + GK F +D L
Sbjct: 7 RKVRNICILAHVDHGKTTLADHLIASSGG--------GVLHPRLAGKLRF-----MDYLD 53
Query: 252 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 422
E+ R IT+ + + Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 54 EEQRRAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 50.4 bits (115), Expect = 7e-07
Identities = 35/113 (30%), Positives = 54/113 (47%)
Frame = +3
Query: 84 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 263
NI ++ H+D+GK+TTT ++Y G K E+ +G+ W ++ E+E
Sbjct: 98 NIGIMAHIDAGKTTTTERILYYTGRNYK---------IGEVHEGTATMDW----MEQEQE 144
Query: 264 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 422
RGITI A K+ + IID PGH DF + D A+ + + G
Sbjct: 145 RGITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG 197
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 50.0 bits (114), Expect = 9e-07
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Frame = +3
Query: 84 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 263
N +I H+D GKST L+ G + R + K F LD + ERE
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 264 RGITIDIAL----WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 422
RGITI + + +E + + + +ID PGH DF + + + A+L+V A G
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 44.4 bits (100), Expect = 4e-05
Identities = 41/122 (33%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Frame = +3
Query: 84 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 263
N +I H+D GKST L+ G I K G G +Y LDKL +RE
Sbjct: 68 NFSIIAHIDHGKSTLADRLMELTGTIKK-------------GHGQPQY---LDKL--QRE 109
Query: 264 RGITIDIALWKF---------ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 416
RGIT+ E S Y + +ID PGH DF + S A+L+V A
Sbjct: 110 RGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAA 169
Query: 417 TG 422
G
Sbjct: 170 QG 171
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 40.7 bits (91), Expect = 6e-04
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 1/128 (0%)
Frame = +3
Query: 42 SVTNQKWARKRRHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGS 218
S +K +R ++ NI ++ HVD GK+T ++ + K ++ Q M +
Sbjct: 69 SEVKKKQLDRRDNVRNIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER- 118
Query: 219 FKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAV 398
++D ERERGITI V IID PGH DF + + D +
Sbjct: 119 -----IMDSNDLERERGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVL 173
Query: 399 LIVAAGTG 422
L+V + G
Sbjct: 174 LVVDSVEG 181
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 40.3 bits (90), Expect = 7e-04
Identities = 33/113 (29%), Positives = 49/113 (43%)
Frame = +3
Query: 84 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 263
NI ++ HVD GK+T ++ + K ++ Q M + ++D ERE
Sbjct: 85 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 129
Query: 264 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 422
RGITI V IID PGH DF + + D +L+V + G
Sbjct: 130 RGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEG 182
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 39.1 bits (87), Expect = 0.002
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Frame = +3
Query: 84 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IEKFEKEAQEMGKG-SFKYAWVLDKLK 251
N+ VI HVD GKST T L+ G I + + + A E +G + K + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
Query: 252 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 407
E ++ + ++Y + +ID+PGH DF + D A+++V
Sbjct: 81 MTDE---SLKSFTGARDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 36.7 bits (81), Expect = 0.009
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Frame = +3
Query: 84 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 263
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 264 RGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 422
R I+I + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 36.7 bits (81), Expect = 0.009
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Frame = +3
Query: 84 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 263
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 264 RGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 422
R I+I + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.15
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 318 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 422
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 32.3 bits (70), Expect = 0.19
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 303 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 413
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 32.3 bits (70), Expect = 0.19
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 303 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 413
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 31.9 bits (69), Expect = 0.26
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 315 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 413
+V+ +D PGH + M+ G + D A+LI+AA
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAA 152
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 31.9 bits (69), Expect = 0.26
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 297 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 413
FE SK +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAA 154
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 30.7 bits (66), Expect = 0.59
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Frame = +3
Query: 54 QKWARKRRHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKY 227
++ K R I ++GHVDSGK+ + C I +++ E Q++G F
Sbjct: 38 EEGGEKLRSIICCIMGHVDSGKTK-----LLDC--IRGTNVQEGEAGGITQQIGATYFPA 90
Query: 228 AWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 407
K ER R + D L + +ID PGH F G+S D A+L+V
Sbjct: 91 -----KNIRERTRELKADAKL-----KVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 324 IIDAPGHRDFIKNMITGTSQADCAVLIV 407
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 324 IIDAPGHRDFIKNMITGTSQADCAVLIV 407
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 318 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 407
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +3
Query: 243 KLKAERERGITIDIALWKFET----SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 410
K+ A GIT I +K +D PGH F G D A+++VA
Sbjct: 525 KVAASEAGGITQGIGAYKVSVPVDGKLQSCVFLDTPGHEAFGAMRARGARVTDIAIIVVA 584
Query: 411 AGTG 422
A G
Sbjct: 585 ADDG 588
>At4g20430.1 68417.m02981 subtilase family protein contains Pfam
profile: PF00082 subtilase family
Length = 856
Score = 27.1 bits (57), Expect = 7.3
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -1
Query: 500 LFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSIN 327
+FDT E L G+ F +TGT ++ IS GS D L I+VS+ N
Sbjct: 714 IFDTSFEDYMSFLCGINGSAPVVFNYTGTNCLRNNATIS--GS-DLNLPSITVSKLNN 768
>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 171
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 237 IPKHI*RILYPFPGPPSRTSRWYVC 163
+P H+ L GPPS +SR Y C
Sbjct: 110 LPSHVPTYLKAAVGPPSSSSRRYFC 134
>At5g27540.1 68418.m03297 GTP-binding protein-related low similarity
to Mig-2-like GTPase Mtl [Drosophila melanogaster]
GI:7271872; contains Pfam profile PF00036: EF hand
Length = 648
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 306 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 440
++Y +D PG ++ ++ G + LIVAA T F +
Sbjct: 2 ARYAAGAVDCPGSPKSVRIVVVGDKGTGKSSLIVAAATDSFPPNV 46
>At5g24280.1 68418.m02856 expressed protein ; expression supported
by MPSS
Length = 1634
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 472 KACSRV*PFLEIPASNSPVPAATMSTAQSA*EVPVIMFLMKS 347
K+C RV F+++ A SP P+ T +Q+ V + F KS
Sbjct: 507 KSCRRVKCFVDLDAGFSPTPSKTDLASQNPFSVALRNFGSKS 548
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1
Query: 467 MLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLA 306
++ + + D F+G + +I LRG+ HVLDE RS++D VL+
Sbjct: 343 LIEEIMIGEDKLIHFSGC-EMGQACSIVLRGASHHVLDE--AERSLHDALCVLS 393
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 84 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 206
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 84 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 206
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -1
Query: 410 SYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPE 288
++D+HS +L+ D + D + ++ N+VL F P+
Sbjct: 52 AFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPK 92
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,484,859
Number of Sequences: 28952
Number of extensions: 204470
Number of successful extensions: 617
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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