Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0582
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    31   0.12 
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    28   1.1  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   2.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   6.1  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   6.1  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   8.0  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   8.0  

>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 14/65 (21%), Positives = 33/65 (50%)
 Frame = +2

Query: 176 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLHKQFNSPINL 355
           P P ++   + PNP+   P + + +D   K K+  + L++ +G+   ++  +    P  +
Sbjct: 607 PAPLQNVYLYSPNPSALPPSDEEEKDINDKAKLIRNALRQRMGQRMTEIRSRD-TPPEEV 665

Query: 356 YSEQN 370
           +SE +
Sbjct: 666 FSESD 670


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +3

Query: 264 NKRWQSRCCSEWLAKRHLRCCTSNSTLQSIYTRN 365
           + RW  RCC E    R L C  S  T QS    N
Sbjct: 342 SSRWDFRCCREERLLRLLLCFDSEHTGQSFIQLN 375


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 197 LRHHPNPAMRAPPNHDY-RDTLMKQKVAESVLQRVVGEEAPKVLHKQ 334
           L  HP+  ++   N+    + LMKQK+ E     V+ +EA ++L  +
Sbjct: 476 LNMHPHDELKQLINNAVDENALMKQKINEEEETEVIAQEAEEILQDE 522


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 279  SRCCSEWLAKRHL 317
            SRCC+ WL+  HL
Sbjct: 2269 SRCCTMWLSNSHL 2281


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 78  DTRILNILKKKLSATGRTAPLLSCS 152
           D+++  ILK+ L    RT  +++CS
Sbjct: 279 DSKLTRILKESLGGNSRTTLIINCS 303


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 125 PYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNH 241
           P    PL  P  ++ R+P P  S     P+    APP H
Sbjct: 44  PVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTH 82


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 17/89 (19%), Positives = 41/89 (46%)
 Frame = +2

Query: 149 LPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLH 328
           L   ++++    +E+YL+ +  P    P +   R+  +  ++  + L  +   +    + 
Sbjct: 52  LQALQMQQSLSESENYLQPNFFPFQSGPFSKSRRENTLLPRL--NPLAPIGARQPNPSIP 109

Query: 329 KQFNSPINLYSEQNIANSIRQQTSPLPTN 415
           +QF+ PIN      +  ++ + TSP+  N
Sbjct: 110 QQFSKPINESGTGTMGPAVGELTSPVMKN 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,039
Number of Sequences: 5004
Number of extensions: 54074
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)