Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0582
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.096
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)                   31   0.90 
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)              29   3.6  
SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8)            28   4.8  
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)                     28   6.3  
SB_46914| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          27   8.4  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 53  STPTCFPNGYQDPKHPEEEVVSNWPYRTTPL-VLPGAKVRREPGPTESYLRHHP 211
           + P+  P   + P HP     S+ PY  T    L G +  REP P  S+  H P
Sbjct: 481 NAPSGMPTHREPPPHPS--FASHQPYHVTSCDALSGMQTHREPPPHPSFASHQP 532



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 83  QDPKHPEEEVVSNWPYRTTPL-VLPGAKVRREPGPTESYLRHHP 211
           + P HP     S+ PY  T    L G +  REP P  S+  H P
Sbjct: 520 EPPPHPS--FASHQPYHVTSCDALSGMQTHREPPPHPSFASHQP 561


>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 336 STLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLS-RGKSFTRNAT 473
           ST +S  T  RT+ + S ++ R+C++   T GR+   RGK   +N+T
Sbjct: 155 STTRSPVTVARTITSQSSNRQRVCEIFGNTSGRSRRVRGKRVQQNST 201


>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
          Length = 570

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 322 HLRCLFANHSLQHR-LCHLLFHKGITVVVVRRCPHC 218
           H  C +   +LQ+R LCH L HK    V ++ C HC
Sbjct: 329 HKLCYYV--ALQYRSLCHYLLHKLCYCVALQYCSHC 362


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/79 (25%), Positives = 32/79 (40%)
 Frame = +3

Query: 264 NKRWQSRCCSEWLAKRHLRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLS 443
           N  W S  CS  LA        +N  + ++  RNR  +T +G+       +A      L+
Sbjct: 229 NSPWYSEACSSTLASAFSSGSWNNRKIVTVDVRNRCTKTHTGT-----SASAPLAAGILA 283

Query: 444 RGKSFTRNATMQQSTHILI 500
                 RN T +   HI++
Sbjct: 284 MALEVNRNLTWRDMQHIVV 302


>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
 Frame = +2

Query: 101 EEEVVSNWPYRTTPLVLPGAKVRRE---PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQK 271
           ++E++ +  +   P     A    E   PG  ++  R  P P    P N +   +L  +K
Sbjct: 290 KQEILESQEFAQAPATPRSATTNPEDSSPGNRKAANRETPPPGTSTPKNIEAASSLQHEK 349

Query: 272 VAESV-LQRVVGEEAPKVLHKQFNSPINL 355
           V E++ ++R+  EE  K   K  N    L
Sbjct: 350 VVETLEIRRMAVEEKRKKRMKYENGETGL 378


>SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)
          Length = 526

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 294 EWLAKRHLRCCTSNSTLQS-IYTRNRTLQTLSGSKLRL 404
           EWL  +H R C   S  Q+   T+NRT+ T S  ++RL
Sbjct: 51  EWLVAKHERACHRASEFQAKTMTKNRTIWTPS-PRIRL 87


>SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 176 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESV-LQRVVGEEAPKVLHKQFNSPIN 352
           PG  ++  R  P P    P N +   +L  +KV E++ ++R+  EE  K   K  N    
Sbjct: 176 PGNRKAANRETPPPGTSTPKNIEAASSLQHEKVVETLEIRRMAVEEKRKKRMKYENGETG 235

Query: 353 L 355
           L
Sbjct: 236 L 236


>SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8)
          Length = 201

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 176 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESV-LQRVVGEEAPKVLHKQFNSPIN 352
           PG  ++  R  P P    P N +   +L  +KV E++ ++R+  EE  K   K  N    
Sbjct: 21  PGNRKAANRETPPPGTSTPKNIEAASSLQHEKVVETLEIRRMAVEEKRKKRMKYENGETG 80

Query: 353 L 355
           L
Sbjct: 81  L 81


>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 800

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 72  GKQVGVERNCYTCRYGRVS 16
           G  +G E+NCYT  +GRVS
Sbjct: 427 GDLLGNEKNCYTTGWGRVS 445


>SB_46914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -3

Query: 388 PDRVCNVLFRV*IDWRVELLVQHLRCLFANHSLQHR-----LCHLLFHK 257
           PD   N +  + +  R + L+ H+R  F N   + R     L HL+FHK
Sbjct: 71  PDTTANQITSMFVKIRKQELIIHIRLTFENEHRRIRLQPGLLIHLIFHK 119


>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
 Frame = +2

Query: 137 TPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPN--HDYRDTLMKQKVAESVLQRVVGEE 310
           TPL L      R P P    L H P P  +A  +  H +   L+    + S    V    
Sbjct: 420 TPLTLSTKPCFRTPHPLSQALLHIPRPFNQALLHVPHTFNQALLHSHPSPSQPSPVSHPP 479

Query: 311 APKVLHKQFNSPINLYSEQNIANSIRQQTSP 403
           A  +LH    SP    S +     +   T P
Sbjct: 480 AQALLHTSHPSPATHPSPKPCFTFLTLSTKP 510


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 71  PNGYQDPKH-PEEEVVSNWPYRTTPLVLPGAKVRREPGP 184
           P+ +  P+H P+ E +    Y++TP+  P  K R  P P
Sbjct: 432 PDSHALPQHTPQGEDLGQAAYQSTPISKPSVKSRLGPRP 470


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,838,489
Number of Sequences: 59808
Number of extensions: 443696
Number of successful extensions: 1520
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)