Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0582
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.23 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   8.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   8.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 7   LSVRYTSIPTSVTISLNPNLLPERIPGS*TS*RRSCQQLAVPHH 138
           + +   ++PTS T S +P  LP+ +P S T  +    +L+  HH
Sbjct: 360 MEIPNVTLPTS-TYSGSPTELPKHLPTSLTKSKMEVMELSDLHH 402


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 19  YTSIPTSVTISLNPNLLP 72
           YT+ P ++   LNPN  P
Sbjct: 210 YTACPPTLACPLNPNPQP 227


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +3

Query: 294 EWLAKRHLRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQL 413
           +W++    +    +  L       +TL T +GS L +C L
Sbjct: 80  KWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICML 119


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 72  RTDTRILNILKKKLSATGRTAPLL 143
           R D RIL++ + +++     +PLL
Sbjct: 211 RADIRILDLSRNEITRLQENSPLL 234


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 33  YKCNNFAQPQLASRTDTRILNILK 104
           ++C+  + P L  R   R LNI K
Sbjct: 98  FECSKTSNPCLPHRNSDRDLNIRK 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,750
Number of Sequences: 438
Number of extensions: 3919
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)