Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0582
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53900.2 68418.m06706 expressed protein similar to unknown pr...    31   0.42 
At5g53900.1 68418.m06705 expressed protein similar to unknown pr...    31   0.42 
At3g44200.1 68416.m04739 protein kinase family protein contains ...    31   0.73 
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    31   0.73 
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family...    29   1.7  
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo...    29   2.2  
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi...    29   3.0  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   3.0  
At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi...    29   3.0  
At3g03950.2 68416.m00414 expressed protein contains Pfam profile...    28   3.9  
At3g03950.1 68416.m00413 expressed protein contains Pfam profile...    28   3.9  
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr...    28   3.9  
At5g03890.1 68418.m00365 hypothetical protein                          27   6.8  
At1g12970.1 68414.m01506 leucine-rich repeat family protein            27   6.8  
At2g43150.1 68415.m05358 proline-rich extensin-like family prote...    27   9.0  

>At5g53900.2 68418.m06706 expressed protein similar to unknown
           protein (gb|AAF34833.1)
          Length = 377

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
 Frame = +2

Query: 47  FRSTPTCFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMR 226
           F S  T  P+    P    +    NW   +  L  P  + +        +L+ +  P   
Sbjct: 209 FSSNRTATPSSSTVPNQIPQSQGFNWGSHSPLLPSPSFQNQLPASARFGFLQDNNVPPQM 268

Query: 227 APPNHDYRDTLMKQKVAESVLQRVVG--EEAPKVLHKQFNSPINLYSEQNIAN 379
            PP  ++ D + K     S+   + G  +EA ++L  Q  +P+N+ ++    N
Sbjct: 269 LPPMEEHEDDI-KWPNGLSLFNALTGRADEASRLLFNQEQNPMNVENQNEFLN 320


>At5g53900.1 68418.m06705 expressed protein similar to unknown
           protein (gb|AAF34833.1)
          Length = 265

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
 Frame = +2

Query: 47  FRSTPTCFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMR 226
           F S  T  P+    P    +    NW   +  L  P  + +        +L+ +  P   
Sbjct: 97  FSSNRTATPSSSTVPNQIPQSQGFNWGSHSPLLPSPSFQNQLPASARFGFLQDNNVPPQM 156

Query: 227 APPNHDYRDTLMKQKVAESVLQRVVG--EEAPKVLHKQFNSPINLYSEQNIAN 379
            PP  ++ D + K     S+   + G  +EA ++L  Q  +P+N+ ++    N
Sbjct: 157 LPPMEEHEDDI-KWPNGLSLFNALTGRADEASRLLFNQEQNPMNVENQNEFLN 208


>At3g44200.1 68416.m04739 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 941

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 311 APKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGRPHVVKRQVFY*KRHNA 478
           AP  LH + +  +N +S+     S+  Q S L  N  +  PH V   V +  RH++
Sbjct: 702 APLPLHVEPSHQVNSHSDNK--TSVMSQNSALEKNNSHSHPHPVVDDVIHVIRHSS 755


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +3

Query: 441  SRGKSFTRNATMQQSTHILIDALMLLSIYYAIFRFLQTIYLFHAK 575
            S+ ++  ++A+M++   ++ D L LLSIYY++ R  Q + L   K
Sbjct: 2332 SKKRALAQSASMEEQ--VIADGLKLLSIYYSVCRPRQEVVLSELK 2374


>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
           protein contains proline-rich domains,
           INTERPRO:IPR000694
          Length = 310

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 121 LAVPHHSSRAPGS*GPKGAW--PHRELPASSPQPSNEGTS*P 240
           +A P  +S  P    P  A   PH++ P S PQP+N  +  P
Sbjct: 1   MATPSPTSSPPSDSNPNSAATPPHQKQPPSPPQPTNPSSPPP 42


>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
           identical to GB:Q43292
          Length = 95

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 15  SIHVHTYKCNNFAQPQLASRTDTRILNILKKKLSATGRTAPLLSCSRELRS---EGSLAP 185
           S H+   +C+  A P    RT    +  +++K + TGR   L +  R  ++   EG+ A 
Sbjct: 26  SFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQAT 85

Query: 186 QR 191
            R
Sbjct: 86  PR 87


>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) similar
           to ribosomal protein L37 GB:BAA04888 from [Homo sapiens]
          Length = 95

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 15  SIHVHTYKCNNFAQPQLASRTDTRILNILKKKLSATGRTAPLLSCSRELRS---EGSLAP 185
           S H+   +C+  A P    RT    +  +++K + TGR   L +  R  ++   EG+ A 
Sbjct: 26  SFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAK 85

Query: 186 QR 191
            R
Sbjct: 86  PR 87


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 71  PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 235
           P+    P+ P+E    N PY  +P+     K RR P P   +    P+P    PP
Sbjct: 463 PSPVHKPQPPKESPQPNDPYDQSPV-----KFRRSPPPPPVHSPPPPSPIHSPPP 512


>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) similar
           to SP:Q43292 from [Arabidopsis thaliana]
          Length = 95

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 15  SIHVHTYKCNNFAQPQLASRTDTRILNILKKKLSATGRTAPLLSCSRELRS---EGSLAP 185
           S H+   +C+  A P    RT    +  +++K + TGR   L +  R  ++   EG+ A 
Sbjct: 26  SFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAK 85

Query: 186 QR 191
            R
Sbjct: 86  PR 87


>At3g03950.2 68416.m00414 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 424

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 260 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 388
           MKQ V+   LQR  GE  P+   K     I  YSE ++ N I+
Sbjct: 217 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 259


>At3g03950.1 68416.m00413 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 425

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 260 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 388
           MKQ V+   LQR  GE  P+   K     I  YSE ++ N I+
Sbjct: 218 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 260


>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 654

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 273 WQSRCCSEWLAKRHLRCCTSNSTLQS-IYTRNRTLQTL 383
           ++  C  +WL   HL C  +  TL S I T N  L++L
Sbjct: 281 YERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSL 318


>At5g03890.1 68418.m00365 hypothetical protein
          Length = 179

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 352 IDWRVELLVQHLRCLFANHSLQHRLCHLL 266
           +++R  + V H+   F+ HS+ H   HLL
Sbjct: 22  LEYREPISVHHILTQFSGHSISHNNTHLL 50


>At1g12970.1 68414.m01506 leucine-rich repeat family protein
          Length = 464

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 182 PTESYLRHHPNPAMRAPPN 238
           P  SY+ HH +PA  APP+
Sbjct: 9   PLLSYVLHHSDPASHAPPS 27


>At2g43150.1 68415.m05358 proline-rich extensin-like family protein
           similar to CRANTZ hydroxyproline-rich glycoprotein
           [Manihot esculenta] gi|7211797|gb|AAF40442; similar to
           extensin gi|1165322|gb|AAB53156; contains proline-rich
           extensin domains, INTERPRO:IPR002965
          Length = 212

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = +2

Query: 5   GSLFDTRPYLQV*QFRSTPTCFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGP 184
           GS   T PY     + S P   P  Y+ P  P +     + Y++ P       V+  P P
Sbjct: 23  GSAMATEPYY----YSSPPP--PYEYKSPPPPVKSPPPPYEYKSPP-----PPVKSPPPP 71

Query: 185 TESYLRHHPNPAMRAPP 235
              Y  H P P +++PP
Sbjct: 72  ---YYYHSPPPPVKSPP 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,388,937
Number of Sequences: 28952
Number of extensions: 297703
Number of successful extensions: 913
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)