Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0581
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14839| Best HMM Match : Homeobox (HMM E-Value=4.3e-13)              31   0.86 
SB_39538| Best HMM Match : VWA (HMM E-Value=0)                         30   1.5  
SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4)                  29   3.5  
SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)              28   4.6  
SB_8857| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_14839| Best HMM Match : Homeobox (HMM E-Value=4.3e-13)
          Length = 319

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 72  LN*LLIDHQNEGFPVVFAARRHCFRSVDEQESREINRSVRLEATDL*HTRKPVF 233
           LN LL   Q E +P     RRH  +  D  E  ++  ++RL      H R  V+
Sbjct: 85  LNALLAQGQTEEWPKEGTKRRHYIKMYDFMEDEDLQSTLRLAGAKYEHQRVKVY 138


>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3208

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = +3

Query: 150  VDEQESREINRSVRLEATDL*HTRKPVFRRSIRY*H*QKEETN*QRIQ-TRQSESAIKSR 326
            ++++ S+E+NR +  EA+   +       +  +      +E N +  Q  +Q++      
Sbjct: 1090 INQEASQEVNREINQEASQEVNQEASQMVKQAQINQEASQEVNQEASQMVKQAQIDQGVS 1149

Query: 327  RSTPQAELESIQTR-NRETIREACRERNRKILRSI 428
            ++  QA+ + +    N+ET +E  RE N+K  R I
Sbjct: 1150 QAVSQADSQEVSREVNQETNQEVNREINQKANRGI 1184


>SB_58611| Best HMM Match : Collagen (HMM E-Value=0.4)
          Length = 773

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 348 LESIQTRNRETIREACRERNRKILR 422
           + ++ TRNRE  R + R RNRK+ R
Sbjct: 513 ISTLLTRNRERRRSSRRRRNRKVCR 537


>SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)
          Length = 141

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 76  FNFSEVYTSIDVLFLAGDPR 17
           FNF +VY+ +D +FLAG+ R
Sbjct: 104 FNFYKVYSVVDEMFLAGELR 123


>SB_8857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 391 PVENETGRFFVQYNNVPMGVEKVGDRLFITV 483
           P EN  G F  ++  VP G +K+G R+ + +
Sbjct: 193 PHENVKGEFTKRWEGVPSGEKKLGRRILLEI 223


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 389 SLSRTKQEDSSFNITMCQWALKRLATDCSLQSLDGDMVY 505
           ++S T++     ++ + QW  +R  T   LQSL G +V+
Sbjct: 598 TMSVTRERLDELSVLLSQWKDRRSCTKRQLQSLIGKLVF 636


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,687,653
Number of Sequences: 59808
Number of extensions: 283057
Number of successful extensions: 765
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)