Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0581
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chai...    30   1.3  
AF003150-5|AAB54213.1|  474|Caenorhabditis elegans Hypothetical ...    28   4.0  

>U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chain
           (clathrin associatedcomplex) protein 2 protein.
          Length = 142

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -2

Query: 76  FNFSEVYTSIDVLFLAGDPR 17
           FNF +VYT +D +FLAG+ R
Sbjct: 105 FNFYKVYTVVDEMFLAGEIR 124


>AF003150-5|AAB54213.1|  474|Caenorhabditis elegans Hypothetical
           protein T05E7.1 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 216 YVISQLLPGEHFG*FPDFPAH 154
           +V S+L+PG HF  FP FP H
Sbjct: 383 HVESELVPGGHFLYFPYFPHH 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,593,615
Number of Sequences: 27780
Number of extensions: 214314
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)