Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0579
         (567 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2SSA2 Cluster: Membrane protein, putative; n=2; Mycopl...    35   1.5  
UniRef50_Q71W48 Cluster: Conserved domain protein; n=1; Listeria...    33   3.5  
UniRef50_A7RXC9 Cluster: Predicted protein; n=1; Nematostella ve...    33   4.7  
UniRef50_Q538A5 Cluster: Chorion b-ZIP transcription factor; n=1...    33   6.2  
UniRef50_Q9Z6Z6 Cluster: tRNA delta(2)-isopentenylpyrophosphate ...    33   6.2  
UniRef50_Q5BYN7 Cluster: SJCHGC09281 protein; n=1; Schistosoma j...    32   8.1  

>UniRef50_Q2SSA2 Cluster: Membrane protein, putative; n=2;
           Mycoplasma|Rep: Membrane protein, putative - Mycoplasma
           capricolum subsp. capricolum (strain California kid /
           ATCC27343 / NCTC 10154)
          Length = 1481

 Score = 34.7 bits (76), Expect = 1.5
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +2

Query: 86  FLRPLILFLIVLTRISIIKSRRINLVVFNMS--CVYMQKNKHSGVGNSFEQNHTNISTFN 259
           F+ P ILF  +   +SIIK   I   V+N++       KN   G  NS + N     T+ 
Sbjct: 743 FVAPAILFQSINQSLSIIKDDVITKSVWNVNKKIDNTSKNDKLGYVNSNDPNTRQTLTYY 802

Query: 260 FVNPRRINSY 289
            +N + INSY
Sbjct: 803 DLNKKNINSY 812


>UniRef50_Q71W48 Cluster: Conserved domain protein; n=1; Listeria
           monocytogenes str. 4b F2365|Rep: Conserved domain
           protein - Listeria monocytogenes serotype 4b (strain
           F2365)
          Length = 321

 Score = 33.5 bits (73), Expect = 3.5
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +2

Query: 104 LFLIVLTRISIIKSRRINLVVFN--MSCVYMQKNKHSGVGNSFEQNHTNISTFNFVNPRR 277
           ++ I L  +S++ + + NL + N  + C  MQ  + +G    F +  T I+  +F+N   
Sbjct: 219 IYTIGLLTLSLLNALKENLFIENSPVCCGIMQWLRENGRQQDFNEKLTEINKRDFINHIL 278

Query: 278 INSYCSQRKGII 313
           INS+    K ++
Sbjct: 279 INSFFGDDKNVL 290


>UniRef50_A7RXC9 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 1529

 Score = 33.1 bits (72), Expect = 4.7
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 420 SSINSIQNGCSKDHLPESERRYRNSIHQSKHQKTWFFRKRVSRLE 554
           S ++ IQ+G SKD   E++   ++ I ++ H K W  +  V  L+
Sbjct: 154 SKLDEIQDGLSKDEFAETQDGLKDQIKKNHHVKKWIVKAPVEILQ 198


>UniRef50_Q538A5 Cluster: Chorion b-ZIP transcription factor; n=1;
           Bombyx mori|Rep: Chorion b-ZIP transcription factor -
           Bombyx mori (Silk moth)
          Length = 512

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +2

Query: 521 MVFSQTSLKTRNILK 565
           MVFSQTSLKTRNILK
Sbjct: 1   MVFSQTSLKTRNILK 15


>UniRef50_Q9Z6Z6 Cluster: tRNA delta(2)-isopentenylpyrophosphate
           transferase; n=8; Chlamydiaceae|Rep: tRNA
           delta(2)-isopentenylpyrophosphate transferase -
           Chlamydia pneumoniae (Chlamydophila pneumoniae)
          Length = 342

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 426 INSIQNGCSKDHLPESERRY-RNSIHQSKHQKTWFFRKRVSR 548
           I  + NG   +   E++R++  NS H +K QKTWF R  + R
Sbjct: 277 IEFLDNGEKLEEYEETKRKFVSNSWHYTKKQKTWFKRYSIFR 318


>UniRef50_Q5BYN7 Cluster: SJCHGC09281 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC09281 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 194

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 401 SLGAQEEFNQFYTKWLLKRSPARVGATISELNTPIQTP-KDMVFSQTSLKTRNI 559
           +L   + F  FY  WLL R    V +T+  L      P K ++FS  SLK  NI
Sbjct: 137 NLDLVDTFVMFYAVWLLSRRSGPVWSTLMGLFIISMAPLKSILFSLLSLKIENI 190


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,649,887
Number of Sequences: 1657284
Number of extensions: 8917562
Number of successful extensions: 24513
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24494
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)