Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0579
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    29   0.36 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   1.5  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    27   2.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   3.4  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   7.7  

>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +2

Query: 332 CRRHGKMPTLGTVSCLGA*RVNISLGAQEEFNQFYTKWLLKRSPARVGATISELNT-PIQ 508
           C RH   P +  ++  G     +  G    +N+  TKW  ++ P   GA  +   T  ++
Sbjct: 463 CIRHNLKPIIFIINNDGYTIERLIHGLHASYNEINTKWGYQQIPKFFGAAENHFRTYCVK 522

Query: 509 TPKDM--VFSQTSLKTRNILK 565
           TP D+  +FS       ++++
Sbjct: 523 TPTDVEKLFSDKEFANADVIQ 543


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -3

Query: 271  RVNKIKCRNICMVLFKTI---SDT*MLIFLHVD 182
            +VNK+  RN+C+V   T+   SD  M++ L+ D
Sbjct: 1211 KVNKMNIRNVCIVFSPTLNIPSDIFMMLILNYD 1243


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 210 VSEIVLNRTIQIFLHLILLTREELTAIVLREKGLLSLRRCGVEDTVKCLLSGQLV 374
           V +IV N  +QI   L + T    +A  LR++ +  LRR  + D +K ++ GQ V
Sbjct: 240 VRDIVQNHLVQILTLLTMETPTTFSADDLRDEKVKVLRRTRLGD-LKDIVLGQYV 293


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -1

Query: 198  FFCM*TQLMLNTTKFILLDLMMLILVNTIRN--RISGLKNFSRPKFNYD*NGSLLYDLKD 25
            ++C      L  T+  +L+++M+ L   IRN  R SGL +F R   + D N +   + K+
Sbjct: 913  YYCFAQMEYLTVTEVKMLNVLMISLSKFIRNSLRNSGLMDFVR-YLDGDENDNAEAETKE 971

Query: 24   KI 19
            K+
Sbjct: 972  KM 973


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 328 QRLKLNNPFSLRTIAVNSSRVNKIKCRNICMVLFKTISDT*MLIFLH 188
           +RLKLN P+++  I V     N   C    M +F+T+        LH
Sbjct: 255 KRLKLNQPYNIMGITVYVLDAN--HCPGSAMFVFETLQSNQTRRVLH 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,477
Number of Sequences: 5004
Number of extensions: 41934
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)