Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0579
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1650 - 38904543-38904662,38904940-38905014,38905100-389051...    29   3.4  
08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656...    27   7.9  
04_04_0173 - 23294511-23294601,23294719-23294849,23295160-232954...    27   7.9  

>01_06_1650 -
           38904543-38904662,38904940-38905014,38905100-38905164,
           38905955-38906037,38906135-38906205,38906385-38906459,
           38906702-38906783,38906869-38906933,38907202-38907312,
           38907394-38907494,38908514-38908619
          Length = 317

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 316 LNNPFSLRTIAVNSSRVNKIKCRNI 242
           LN   SLR I V  S VN+ KC  I
Sbjct: 32  LNGSVSLRLIQVRQSNVNRFKCNGI 56


>08_02_1382 +
           26565137-26565210,26565330-26565468,26565489-26565603,
           26565761-26565828,26565907-26566551,26566927-26567031,
           26567115-26567465
          Length = 498

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 275 RINSYCSQRKGIIKFKTLWCRRHGKMPTLGTVSCLGA*RVNI 400
           R+  YC  R G++   T   R HG   T   V+  GA   N+
Sbjct: 385 RLELYCEDRVGLLSDVTRIFREHGLSVTHAEVATRGARAANV 426


>04_04_0173 -
           23294511-23294601,23294719-23294849,23295160-23295483,
           23296016-23296147,23296225-23296373,23296536-23296670,
           23296997-23297090,23297199-23297318,23298096-23298182,
           23298273-23298386,23299089-23299270,23299960-23300023,
           23300191-23300337,23300636-23300845,23301048-23301217,
           23301355-23301477,23301589-23301661,23301765-23301857
          Length = 812

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
 Frame = +2

Query: 71  FGLE-KFLRPLILFLIVLTRISIIKSRRINLV--VFNMSCVYMQKNKHSGVGNSFE--QN 235
           FG++   L P ILF I+    S  K+  +++   +  +S +  +   H G  ++ +  Q 
Sbjct: 489 FGVKCDVLEPTILFRIIEVLQSTYKAGNLHITEQLSFLSLLMARFRVHPGSFSTQDNSQK 548

Query: 236 HTNISTFNFVNPRRINSYCSQRKGIIKFKTLW---CRRHGKMPTLGTVSCLGA*RVNISL 406
            +N++TF  +N   +NS      G +  + +W    +   ++P+L  ++  G  R+ ++L
Sbjct: 549 GSNMNTFKSLNRLILNSLSEMGDGSLVLELMWDNLSKEIAQIPSLHNMN--GLFRIIVTL 606

Query: 407 GA 412
            A
Sbjct: 607 DA 608


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,830,792
Number of Sequences: 37544
Number of extensions: 223207
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)