Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0579
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)                   33   0.16 
SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)                   29   3.5  
SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)                     29   3.5  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 28   6.1  
SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  

>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
          Length = 648

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 420 SSINSIQNGCSKDHLPESERRYRNSIHQSKHQKTWFFRKRVSRLE 554
           S ++ IQ+G SKD   E++   ++ I ++ H K W  +  V  L+
Sbjct: 291 SKLDEIQDGLSKDEFAETQDGLKDQIKKNHHVKKWIVKAPVEILQ 335


>SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 184 DTAHVKYNQIYSS*FNDAYSCQYNKKQN 101
           +T H +YN  Y++ +N  Y+ +YN + N
Sbjct: 73  NTEHTEYNTEYNTEYNTEYNTEYNTEYN 100


>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
          Length = 653

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 421 VQSILYKMVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFES 567
           V+   YK         S+ D  G  YT+ N KR  F  N + ++K FE+
Sbjct: 53  VKEKFYKFALTFAAAESKEDSNGVNYTDWNIKRIAFVVN-TTNNKDFEN 100


>SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)
          Length = 284

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 421 VQSILYKMVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFES 567
           V+   YK         S+ D  G  YT+ N KR  F  N + ++K FE+
Sbjct: 172 VKEKFYKFALTFAAAESKEDSNGVNYTDWNIKRIAFVVN-TTNNKDFEN 219


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 450 SKDHLPESERRYRNSIHQSKHQK 518
           S+D   + ERR RN IH  K QK
Sbjct: 143 SRDETGDFERRLRNEIHDLKEQK 165


>SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 184 DTAHVKYNQIYSS*FNDAYSCQYNKKQN 101
           +T +++YN  Y++ +N  Y+ +YN + N
Sbjct: 145 NTEYIEYNTEYNTEYNTEYNTEYNTEYN 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,837,284
Number of Sequences: 59808
Number of extensions: 286663
Number of successful extensions: 1414
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)