Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0579
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like fact...    27   7.1  
AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like fact...    27   7.1  
Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical p...    27   9.4  

>U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical
           protein F28C10.4 protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 131 SIIKSRRINLVVFNMSCVYMQKNKHSGV 214
           SI KS   +L+VFN S  + QKN H  +
Sbjct: 359 SIYKSLTSHLLVFNFSFFFQQKNTHYSI 386


>Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical
           protein F39H11.2 protein.
          Length = 505

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/97 (22%), Positives = 36/97 (37%)
 Frame = +3

Query: 198 ISIQVSEIVLNRTIQIFLHLILLTREELTAIVLREKGLLSLRRCGVEDTVKCLLSGQLVV 377
           I IQ+  +V N T+ + + L  L          REKG++  ++      +K   SG++ +
Sbjct: 263 IDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYI 322

Query: 378 WXXXXXXXXXXXXXSSINSIQNGCSKDHLPESERRYR 488
                         S    +Q    K     S R YR
Sbjct: 323 VGCRSEADCKRAARSIARHVQRVMGKTKERVSIRNYR 359


>AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/97 (22%), Positives = 36/97 (37%)
 Frame = +3

Query: 198 ISIQVSEIVLNRTIQIFLHLILLTREELTAIVLREKGLLSLRRCGVEDTVKCLLSGQLVV 377
           I IQ+  +V N T+ + + L  L          REKG++  ++      +K   SG++ +
Sbjct: 263 IDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYI 322

Query: 378 WXXXXXXXXXXXXXSSINSIQNGCSKDHLPESERRYR 488
                         S    +Q    K     S R YR
Sbjct: 323 VGCRSEADCKRAARSIARHVQRVMGKTKERVSIRNYR 359


>AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 505

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/97 (22%), Positives = 36/97 (37%)
 Frame = +3

Query: 198 ISIQVSEIVLNRTIQIFLHLILLTREELTAIVLREKGLLSLRRCGVEDTVKCLLSGQLVV 377
           I IQ+  +V N T+ + + L  L          REKG++  ++      +K   SG++ +
Sbjct: 263 IDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYI 322

Query: 378 WXXXXXXXXXXXXXSSINSIQNGCSKDHLPESERRYR 488
                         S    +Q    K     S R YR
Sbjct: 323 VGCRSEADCKRAARSIARHVQRVMGKTKERVSIRNYR 359


>Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 237 WFCSKLFPTPECLFFCM*TQLMLNTTKFILL 145
           W C   F  P CLFF +   ++  T KF+L+
Sbjct: 184 WLC--FFVVPFCLFFTLILFILPETPKFLLI 212


>Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 237 WFCSKLFPTPECLFFCM*TQLMLNTTKFILL 145
           W C   F  P CLFF +   ++  T KF+L+
Sbjct: 184 WLC--FFVVPFCLFFTLILFILPETPKFLLI 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,198,551
Number of Sequences: 27780
Number of extensions: 233386
Number of successful extensions: 598
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)