Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0579
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   0.93 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   4.9  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   6.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   6.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 119 LTRISIIKSRRINLVVFNMSCVYMQKNKHSGVGNSFE 229
           L  ++  KS RIN+    M  VY Q NK+ G G S +
Sbjct: 485 LPMVNHSKSSRINIE--RMKQVYQQLNKYRGNGVSLK 519


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 179 CVYMQKNKHSGVGNSFEQNHTNISTFNFVNPRRINSYCSQRK 304
           C Y   NK   + NS  ++H+N+  +   N      YC   K
Sbjct: 22  CSYSCVNK--SMLNSHLKSHSNVYQYRCANCTYATKYCHSLK 61


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 142 FNDAYSCQYNKKQNQRP*KLFKTKI 68
           +N+ Y+  YN   N    KL+K  I
Sbjct: 97  YNNNYNNNYNNNYNNNYKKLYKNYI 121


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 142 FNDAYSCQYNKKQNQRP*KLFKTKI 68
           +N+ Y+  YN   N    KL+K  I
Sbjct: 97  YNNNYNNNYNNNYNNNYKKLYKNYI 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,401
Number of Sequences: 438
Number of extensions: 2696
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)