Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0579
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15440.2 68414.m01856 transducin family protein / WD-40 repea...    27   8.7  
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea...    27   8.7  

>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
           family protein Strong similarity to gb X95263 Periodic
           tryptophan protein 2 gene (PWP2) from Homo sapiens and
           contains 6 WD40, G-beta repeat domains
          Length = 860

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 243 IFLHLILLTREELTAIVLREKGLLSLRRCGVEDTVKCLLSGQLVVW 380
           I +HL+ ++R++LT  V  E+G           T  C   GQL+VW
Sbjct: 297 ICIHLLSISRQKLTTAVFNERGNWL--------TFGCAKLGQLLVW 334


>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
           family protein Strong similarity to gb X95263 Periodic
           tryptophan protein 2 gene (PWP2) from Homo sapiens and
           contains 6 WD40, G-beta repeat domains
          Length = 900

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 243 IFLHLILLTREELTAIVLREKGLLSLRRCGVEDTVKCLLSGQLVVW 380
           I +HL+ ++R++LT  V  E+G           T  C   GQL+VW
Sbjct: 337 ICIHLLSISRQKLTTAVFNERGNWL--------TFGCAKLGQLLVW 374


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,156,018
Number of Sequences: 28952
Number of extensions: 203993
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)