Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0578
(318 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 38 3e-04
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 25 3.7
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin... 25 3.7
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 24 4.8
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 24 4.8
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 24 4.8
SPCC18B5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 24 4.8
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 24 6.4
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 24 6.4
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 24 6.4
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 24 6.4
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 24 6.4
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 23 8.5
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 23 8.5
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce... 23 8.5
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 23 8.5
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 38.3 bits (85), Expect = 3e-04
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = +1
Query: 37 REPFLNYFAAILQRNERRAQLQTDERTLAGDGFMLNVCSVLQLLSVRI------KLERVY 198
RE L++FA ++ N +R +Q + + D MLN VL LS K++RV
Sbjct: 352 RESVLDFFAMVVNANHKRQSIQVNHFDITSDACMLNFSHVLSRLSEPFLDIGCSKIDRVQ 411
Query: 199 PLYTFQPDSWANVRDETRL 255
Y F+ + ++++ET+L
Sbjct: 412 VEY-FRRNPRVDIKEETKL 429
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 152 RCYNCCPSALSWSACTRCTLSNRTRGRTSATRLDCTSPRK 271
RCYNC + CT+ ++ +T +CT P++
Sbjct: 18 RCYNCGENGHQARECTKGSICYNC-NQTGHKASECTEPQQ 56
>SPBPB21E7.04c ||SPAPB21E7.04c,
SPAPB21E7.04c|S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 281
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Frame = -1
Query: 315 VVRIVIEFIEPV-----LGLLRGEVQSSLVADVRPRVRLE 211
V+ ++ E++E +G L+G++ S + V+P+V +E
Sbjct: 61 VINVIDEYVEQGHFLMNIGKLKGKIISEKIQQVKPKVMIE 100
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 24.2 bits (50), Expect = 4.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 170 PSALSWSACTRCTLSNRTRGRTSATRLDCTSPRKRPRTGSMNSIT 304
PS+ S SA + T + + S+T L +SP T S+ SI+
Sbjct: 110 PSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSIS 154
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 24.2 bits (50), Expect = 4.8
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 173 SALSWSACTRCTLSNRTR-GRTSATRLDC 256
S++ + CTRC L R R R+ AT+ C
Sbjct: 312 SSVVKTCCTRCLLRERKRNARSQATKDAC 340
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 24.2 bits (50), Expect = 4.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 261 EVQSSLVADVRPRVRLESVQRVHALQLN 178
E+ S LV+ +RP ++ +Q+V+ +LN
Sbjct: 284 ELVSQLVSVLRPLIKRMVIQKVNVAELN 311
>SPCC18B5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 116
Score = 24.2 bits (50), Expect = 4.8
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +1
Query: 187 ERVYPLYTFQPDSWANVRDETRLYFT---AQEAQD-WLDEL 297
ERV Y QPD +D R Y T QEAQ +LD L
Sbjct: 37 ERVLRSYFKQPDLIITWKDSMRAYLTFSSPQEAQKAYLDSL 77
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 23.8 bits (49), Expect = 6.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Frame = +2
Query: 164 CCPSALSWSACTRCTLSN 217
CC L W C +C+ N
Sbjct: 307 CCICKLRWGTCVQCSDKN 324
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 23.8 bits (49), Expect = 6.4
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = -2
Query: 269 CAVKYSLVSSRTFAHESGWKVYSGYTRSSLMRTDS 165
C+V +SL RTF++ES V SG++R+S ++S
Sbjct: 788 CSV-HSL-QQRTFSNESPRAVDSGFSRTSTPFSES 820
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 23.8 bits (49), Expect = 6.4
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -1
Query: 297 EFIEPVLGLLRGEVQSSLVADVRPRV-RLESV-QRVHALQLNADGQQL 160
EFI GL RGE + + V RV L + ++ +++ADG++L
Sbjct: 107 EFIAKYEGLARGETKPEVEVAVAGRVLGLRTAGNKLRFYEIHADGKKL 154
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 23.8 bits (49), Expect = 6.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 315 VVRIVIEFIEPVLGLLRGEVQSSLVADVRPRVRLE 211
+ + V+E IEP + G+ SL A +P R+E
Sbjct: 365 LAQAVLEVIEPGFWIYIGDTHPSLPAGEQPVKRME 399
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 23.8 bits (49), Expect = 6.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 181 KLERVYPLYTFQPDSWAN-VRDETRLYFTAQEAQDWLDELNNDP 309
+LE+ YP + P W N V+ T +F+ + + ++L DP
Sbjct: 126 ELEKQYPAAGYSPSDWWNRVKARTNNFFSYYQ-EPAFEKLLPDP 168
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -2
Query: 215 WKVYSGYTRSSLMRTDSNCNTEHTFN 138
WK+YS T S NT H +N
Sbjct: 400 WKIYSAPTWMLARPKFSQINTSHLYN 425
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 79 NERRAQLQTDERTLAGDGFMLNVCSVLQLLSV 174
N+ + +L + T +GF +N+ +L LLS+
Sbjct: 1134 NDMKGELNYENET---EGFSINIREILDLLSI 1162
>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 241 DETRLYFTAQEAQDWLDELNNDPNHK 318
D T Y T +A + D+L++ P H+
Sbjct: 12 DPTVTYSTKDDADELFDDLSSSPLHE 37
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 237 DVRPRVRLESVQRVHALQLNADG 169
D+RP+VR S+Q + L+ DG
Sbjct: 149 DLRPKVRKISIQVLQTLKQKYDG 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,255,718
Number of Sequences: 5004
Number of extensions: 21671
Number of successful extensions: 71
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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