Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0578
(318 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0128 - 10437407-10438049,10438097-10438272 39 0.001
05_07_0043 - 27284814-27285190,27285287-27285488,27285576-272856... 30 0.34
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 30 0.45
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 29 1.0
03_05_0581 + 25820919-25821341 27 2.4
09_02_0297 - 7051592-7052469,7053197-7053302,7053396-7053471,705... 27 4.2
03_01_0156 - 1250251-1250436,1250633-1250674,1250794-1250835,125... 27 4.2
12_02_0314 - 17408216-17409078,17409107-17409284 26 5.6
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576... 26 5.6
02_02_0258 - 8374442-8375083 26 5.6
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941... 26 5.6
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 26 7.4
03_06_0570 - 34794678-34795115,34795339-34795920,34796008-347961... 26 7.4
10_08_0285 - 16493678-16493750,16493824-16494380,16494657-164947... 25 9.7
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 25 9.7
03_01_0645 - 4731037-4731543,4731706-4731933 25 9.7
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 38.7 bits (86), Expect = 0.001
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +2
Query: 83 NDAHNCRLMNV----RSLAMASC*TCVRCYNCCPSALSWSACTRCTLSNRTRGRTSATRL 250
+D H R ++ RS A S TC C P++ S C +R T+A R+
Sbjct: 118 DDGHRARQRHLPRRSRSTASTSSTTCRTCCRATPNSTS-----PCKTGSRCSSSTTARRI 172
Query: 251 DCTSPRKRPRTGS 289
TSPRKR R GS
Sbjct: 173 SITSPRKRGRGGS 185
>05_07_0043 -
27284814-27285190,27285287-27285488,27285576-27285650,
27285743-27285816,27285909-27285996,27286081-27286203,
27288374-27288580,27288631-27288636
Length = 383
Score = 30.3 bits (65), Expect = 0.34
Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = +1
Query: 55 YFAAILQRNERRAQLQTDERTLAGDGFMLNVCSVLQLLSVRIKLERVYPLYTFQPDSWA- 231
Y + Q N RAQL+ + + + +CS + +V ++ + + T + ++++
Sbjct: 30 YRRKVDQANRSRAQLR--QAIAQYEAELAAICSAIGETTVHVRQQIEAYISTVKEEAFSR 87
Query: 232 -NVRDETRLYFTAQEAQDWLDELNNDPN 312
++ + + A+E + WL++ N D N
Sbjct: 88 KDILERVEKWLNAREEEAWLEDYNKDDN 115
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 29.9 bits (64), Expect = 0.45
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 1 NICHNILVCPEAREPFLNYFAAILQRNERRAQLQTDE 111
++ H++L PEA+ YF A ++ RR L+TDE
Sbjct: 733 SLLHDVL-SPEAQLRLCGYFQAAARKRSRRYMLETDE 768
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 125 AMASC*TCVRCYNCCPSALSWSACTRCTLSNRTRGRTSATRLDCTSPRKRPRTGSMNSIT 304
A+A+ C R ++ S+ C + N TR + DCTSP +R + S+ +
Sbjct: 467 ALAASVRCKRSWSTSSFGTSFDLCN--SWGNPTRFHGAGRPRDCTSPARRIVSSSLEELA 524
Query: 305 IRTT 316
T+
Sbjct: 525 SNTS 528
>03_05_0581 + 25820919-25821341
Length = 140
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 264 GEVQSSLVADVRPRVRLESVQRVHALQLNADGQQL*HRTHVQHEAIA 124
G+ ++ D+R L V+R HAL + D ++ R H+ H A++
Sbjct: 23 GDADLAVRDDLRTAAELRVVRRRHALPVPHDRRRRSLRCHLLHSAVS 69
>09_02_0297 -
7051592-7052469,7053197-7053302,7053396-7053471,
7053581-7053648
Length = 375
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 176 ALSWSACTRCTLSNRTRGRTSATRLDCTS 262
+++ +AC C T R S RLDC S
Sbjct: 124 SINRAACCSCVFFESTSSRRSCFRLDCKS 152
>03_01_0156 -
1250251-1250436,1250633-1250674,1250794-1250835,
1250935-1251034,1251125-1251186,1251333-1251356
Length = 151
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 97 LQTDERTLAGDGFMLNVCSVLQLLSVRIKLER 192
L+T +R L G+ L+ CS+ +L S+ +KLER
Sbjct: 24 LETYKRKLLGE--KLDECSIEELHSLEVKLER 53
>12_02_0314 - 17408216-17409078,17409107-17409284
Length = 346
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 127 RQRAYVHQSAVVRVVHFAAVWPRNSLGKAP*PRDRPGYYD 8
RQ A V ++AVV FAA+W PR+ Y++
Sbjct: 58 RQGAEVTRNAVVEAARFAALWVSFCRKHGVEPRNPEAYFN 97
>12_01_0676 +
5765154-5765241,5765329-5765453,5765533-5765604,
5765728-5765802,5765880-5765905,5766709-5766870,
5766963-5767037,5767133-5767204,5767289-5767363,
5767461-5767529,5767839-5767910,5768030-5768161,
5768430-5768920,5769315-5769476,5769570-5769709,
5769818-5770037,5770398-5770633,5771560-5772051
Length = 927
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 65 PYCSEMNDAHNCRLMNVRSLAMASC*TCVRCYNCCPSALS 184
PYC+++ND +C+ + A+ T C P+ LS
Sbjct: 353 PYCNQVNDDVHCKATGQSNPALPPYKTTSNCPALPPTCLS 392
>02_02_0258 - 8374442-8375083
Length = 213
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 152 RCYNCCPSALSWSACTRCTLSNRTRGRTSAT 244
RC PSA W C C + R R R + +
Sbjct: 74 RCLAPLPSAARWLLCLPCRCARRRRRRPATS 104
>01_04_0068 +
15693131-15693533,15693604-15693803,15693879-15694162,
15694251-15694428
Length = 354
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 167 CPSALSWSACTRCTLSNRTRGRTSATRLDCTSPRK 271
C + SA + CT+S+ + G +++T CTS K
Sbjct: 83 CTISSGSSATSSCTISSSSSGSSTSTVSACTSQDK 117
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 71 CSEMNDAHNCRLMNVRSLAMASC*TCVRCYNCCPSALSWS 190
C++MND C ++ + A +C + CY CC S S
Sbjct: 682 CNKMND--QCAIVMTQVCAAFAC---LGCYECCAELCSGS 716
>03_06_0570 -
34794678-34795115,34795339-34795920,34796008-34796146,
34796261-34796402,34796504-34796621,34796713-34796820,
34796894-34796968,34797774-34798003,34798086-34798388,
34798949-34799130,34800288-34800371,34800799-34801391
Length = 997
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 184 LERVYPLYTFQPDSWANVRDETRLYFTA--QEAQDWLDELNNDP 309
L+R + F+PD+ + T L+ A +A+D LD L NDP
Sbjct: 808 LKRTAETFLFRPDAQGPSKF-TPLHIAAATDDAEDVLDALTNDP 850
>10_08_0285 -
16493678-16493750,16493824-16494380,16494657-16494798,
16495349-16495459,16495593-16496812
Length = 700
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 214 QPDSWANVRDETRLYFTAQEAQDWL 288
+P W + R TRL QE Q W+
Sbjct: 185 RPYPWLDERSTTRLLMRRQEGQRWV 209
>04_04_1405 -
33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 16 ILVCPEAREPFLNYFAAILQRNERRAQLQTDE 111
+LV PE EP L Y AA Q ++ DE
Sbjct: 898 VLVAPEPNEPLLLYLAATPQVVSAALVVERDE 929
>03_01_0645 - 4731037-4731543,4731706-4731933
Length = 244
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/31 (29%), Positives = 13/31 (41%)
Frame = +2
Query: 146 CVRCYNCCPSALSWSACTRCTLSNRTRGRTS 238
C RC+ W AC C + T ++S
Sbjct: 192 CARCHMLVMMCREWPACPNCKFVHPTANQSS 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,607,601
Number of Sequences: 37544
Number of extensions: 157947
Number of successful extensions: 470
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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