Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0578
         (318 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)                       46   5e-06
SB_17477| Best HMM Match : PSI (HMM E-Value=1.7)                       33   0.050
SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.47 
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)         29   1.1  
SB_17743| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.5  
SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)                 27   3.3  
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        27   3.3  
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)     27   4.4  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      27   4.4  
SB_8378| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.4  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              26   5.8  
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)                  26   5.8  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  
SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)                  26   7.6  
SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  
SB_25357| Best HMM Match : Homeobox (HMM E-Value=8.3e-28)              26   7.6  

>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
          Length = 853

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 23/87 (26%), Positives = 46/87 (52%)
 Frame = +1

Query: 1   NICHNILVCPEAREPFLNYFAAILQRNERRAQLQTDERTLAGDGFMLNVCSVLQLLSVRI 180
           NI H++LV   ++E  L Y +A+LQRN+++AQ+Q D   L      L++    ++ + + 
Sbjct: 255 NIIHSLLVSNGSKEACLQYLSAVLQRNQKKAQMQIDNLYLVHPKSKLDLSQETRIKATKD 314

Query: 181 KLERVYPLYTFQPDSWANVRDETRLYF 261
            +++       +  +W  V+  T  +F
Sbjct: 315 DVQKFKEELGSRGGAWLEVKFPTECFF 341


>SB_17477| Best HMM Match : PSI (HMM E-Value=1.7)
          Length = 206

 Score = 33.1 bits (72), Expect = 0.050
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
 Frame = +2

Query: 71  CSEMNDAHNCRLMN--VRSLAMASC*TCVRCYNC--------CPSALSWSACTRC 205
           C  MN    C  MN   R + M  C  CV  Y C        CP  ++ + C RC
Sbjct: 111 CVTMNGCSRCVTMNGCARCVTMNGCARCVTIYGCARCVTMNGCPRCVTMNGCARC 165



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 116 RSLAMASC*TCVRCYNCCPSALSWSACTRC-TLSNRTRGRTSATRLDCTSPRKRPRTGSM 292
           R + M  C  CV   N C   ++ + C RC T++   R  T      C +    PR  +M
Sbjct: 101 RCVTMNGCACCVTM-NGCSRCVTMNGCARCVTMNGCARCVTIYGCARCVTMNGCPRCVTM 159

Query: 293 N 295
           N
Sbjct: 160 N 160


>SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 16/59 (27%), Positives = 22/59 (37%)
 Frame = +2

Query: 68  YCSEMNDAHNCRLMNVRSLAMASC*TCVRCYNCCPSALSWSACTRCTLSNRTRGRTSAT 244
           YC   +  HNC  ++              CYNC  S+   S CT      + RG+   T
Sbjct: 387 YCKRKHSTHNCATVSDPKARKDIVVKLRLCYNCLSSSHISSKCTSKFRCRQCRGKHHTT 445


>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
          Length = 879

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
 Frame = +2

Query: 68  YCSEMNDAHNCRLMNVRSLAMASC*TCVRCYNCCPSALSWSACT---RCTLSNRTRGRTS 238
           YC   +  HNC  ++              CYNC  S+   S CT   RC      R  T 
Sbjct: 186 YCKGKHSTHNCATVSDPKAGKGIVVKLRLCYNCLSSSHISSKCTSKFRCRQCGGKRHTTI 245

Query: 239 ATRLDCTSP---RKRPRTGSMNSITIRTT 316
             R     P    K P   +  S ++ TT
Sbjct: 246 CERDKGQGPPPGNKEPPPQADPSQSVHTT 274


>SB_17743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = +2

Query: 71  CSEMNDAHNCRLMN--VRSLAMASC*TCVRCYNCCPSALSWSACTRCTLSN 217
           C  MN    C  +    R + M  C  CV   N CP  ++ + CT C   N
Sbjct: 201 CVTMNGCARCVTIYGCARCVTMNGCARCVTM-NGCPRCVTMNGCTCCVTIN 250


>SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = +2

Query: 65  PYCSEMNDAHNCRL-MNVRSLAMASC*TCVRCYNCCPSALSWSACTRC 205
           P C E      C    ++ SL   SC  C  C +  P   +W+A   C
Sbjct: 408 PICMEFAKRGFCTTHKHIPSLCWKSCSGCAACVDLKPECEAWAAQGEC 455


>SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)
          Length = 1033

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 241 DETRLYFTAQEAQDWLDELNNDPNH 315
           D+T +Y  A    D  D+LN+D NH
Sbjct: 306 DDTAIYCEASSPADLQDKLNSDLNH 330


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 188 SACTRCTLSNRTRG-RTSATRLDCTSPRKRPRTGSMN 295
           S   RC L+ R  G RT+   +DC  P   PR GS++
Sbjct: 492 SVTRRCQLNRRWSGTRTTCNAVDC-GPLYSPRYGSLH 527


>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
          Length = 832

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/62 (25%), Positives = 21/62 (33%)
 Frame = +2

Query: 14  ISWSVPRLGSLS*TISRPYCSEMNDAHNCRLMNVRSLAMASC*TCVRCYNCCPSALSWSA 193
           + W  P+       I   YC   +  HNC  +               CYNC  S+   S 
Sbjct: 56  VKWPHPQGKGKPKVIQCVYCKGKHSTHNCATVFDPKARKDIVVKLRLCYNCLSSSHISSK 115

Query: 194 CT 199
           CT
Sbjct: 116 CT 117


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 182 SWSACTRCTLSNRTRGRTSATRLDCTSP 265
           +WSA TRC+LS    G T +    C SP
Sbjct: 377 NWSAFTRCSLS--CGGGTQSRNRSCDSP 402


>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = +2

Query: 68  YCSEMNDAHNCRLMNVRSLAMASC*TCVRCYNCCPSALSWSACT 199
           YC   +  HNC  ++              CYNC  S+   S CT
Sbjct: 285 YCKGKHSTHNCATVSDPKARKDIVVKLRLCYNCLSSSHISSKCT 328


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +2

Query: 71  CSEMNDAHNCRLMNVRSLAMASC*TCVRCYNC----CPSALSWSACTRCTLSNRTRGRTS 238
           CS     ++CR++   S  +A C   V CY+C    C   +   +C     S R   + S
Sbjct: 214 CSCRVVCYSCRVV-CYSCRVACCSCRVVCYSCRVACCSCRVVCYSCRVACCSCRVHMKCS 272

Query: 239 ATRLDCTSPR 268
           + R+ C+S R
Sbjct: 273 SCRVVCSSCR 282



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +2

Query: 53  TISRPYCSEMNDAHNCRLMNVRSLAMASC*TCVRCYNCCPSALSWS-ACTRC-TLSNRTR 226
           T+ R   + + DAH   LM   S  +A C   V CY+C     S   AC  C  +    R
Sbjct: 102 TVLRIAHAVLRDAHVVLLMPCCSCRIACCSCRVVCYSCRVVFCSCRVACCSCRVVCYSCR 161

Query: 227 GRTSATRLDCTSPR 268
               + R+ C S R
Sbjct: 162 VACCSCRVACCSCR 175


>SB_8378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 143 TCVRCYNCCPSALSWSACTRCTLSNRTR 226
           TC+ C+ CC    S++A  +    +R R
Sbjct: 18  TCISCFRCCGKCQSFNAKQKTRFMSRYR 45


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 155 CYNCCPSALSWSACTRCTLSNRTRGRTSATRLDCTS 262
           CY CC S  + +A    T +  T   T+AT    T+
Sbjct: 515 CYYCCCSCTATTATATTTATATTTATTAATATTTTT 550


>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
          Length = 240

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 197 TRCTLSNRTRGRTSATRLDCTSPRKRPRTGSMNSI 301
           T    S +T  RTS  R   TSP+  P+T  M S+
Sbjct: 80  TSLNASRKTSRRTSLKRSLKTSPKTSPKTMRMKSL 114


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +2

Query: 158  YNCCPSALSW-SACTRCTLSNRTRGRTSA 241
            YNCC +   W + CT       T G T+A
Sbjct: 2158 YNCCTNEYGWNNCCTHGATPMSTDGTTAA 2186


>SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)
          Length = 129

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 80  MNDAHNCRLMNVRSLAMASC*TCVRCYNCCPSALSWSACTRCTL 211
           MN    CR   VRS+ ++ C  CVR   C      ++ C R  +
Sbjct: 26  MNPICTCRY--VRSVDVSLCAQCVRVVICAVCVSLYAQCVRVVM 67


>SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 272 SCAVKYSLVSSRTFAHESGW 213
           SC ++YS  S    AH SGW
Sbjct: 181 SCKLRYSAYSREAQAHISGW 200


>SB_25357| Best HMM Match : Homeobox (HMM E-Value=8.3e-28)
          Length = 317

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 127 DGFMLNVCSVLQLLSVRIKLERVYPLYTFQPD 222
           D FMLN+  +LQL++ R    + + ++ F P+
Sbjct: 257 DLFMLNIGGILQLMTFRSN-NKAFTIFGFTPE 287


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,089,720
Number of Sequences: 59808
Number of extensions: 184791
Number of successful extensions: 567
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)