Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0578
(318 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47812-6|CAC70105.1| 984|Caenorhabditis elegans Hypothetical pr... 46 4e-06
Z47812-5|CAA87792.1| 980|Caenorhabditis elegans Hypothetical pr... 46 4e-06
Z47812-10|CAH04720.1| 979|Caenorhabditis elegans Hypothetical p... 46 6e-06
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 30 0.41
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 30 0.41
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 30 0.41
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 30 0.41
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm... 29 0.73
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm... 29 0.73
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ... 29 0.73
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr... 27 3.9
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr... 27 3.9
U23527-2|AAP40525.1| 300|Caenorhabditis elegans Neuronal igcam ... 27 3.9
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ... 27 3.9
M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein ( C.ele... 27 3.9
M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein ( C.ele... 27 3.9
L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated p... 27 3.9
L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated p... 27 3.9
AF016679-6|AAB66156.1| 490|Caenorhabditis elegans Hypothetical ... 26 5.1
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 26 6.8
Z77658-1|CAB01158.1| 98|Caenorhabditis elegans Hypothetical pr... 26 6.8
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 26 6.8
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 26 6.8
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 26 6.8
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 26 6.8
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is... 26 6.8
AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical ... 26 6.8
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli... 26 6.8
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes... 26 6.8
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 25 8.9
U61235-1|AAB17540.1| 485|Caenorhabditis elegans ZK protein. 25 8.9
U21308-4|AAB93321.1| 484|Caenorhabditis elegans Warthog (hedgeh... 25 8.9
AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote defect... 25 8.9
AF040659-9|AAK39391.1| 344|Caenorhabditis elegans Hypothetical ... 25 8.9
AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote defec... 25 8.9
AC006656-3|AAF39882.1| 549|Caenorhabditis elegans Hypothetical ... 25 8.9
>Z47812-6|CAC70105.1| 984|Caenorhabditis elegans Hypothetical
protein T05H10.5b protein.
Length = 984
Score = 46.4 bits (105), Expect = 4e-06
Identities = 26/93 (27%), Positives = 43/93 (46%)
Frame = +1
Query: 34 AREPFLNYFAAILQRNERRAQLQTDERTLAGDGFMLNVCSVLQLLSVRIKLERVYPLYTF 213
+R L + A I+ N+ R + D + D +M N SV+ + S +I L ++ Y F
Sbjct: 348 SRNKTLRWIATIISTNDIRTRSHYDPSDVLCDHYMTNFLSVMYMFSEKIDLSKIIVDYPF 407
Query: 214 QPDSWANVRDETRLYFTAQEAQDWLDELNNDPN 312
P S N+ ETRL A + + + P+
Sbjct: 408 LPSSLINISKETRLKMDESGAVAFASQFADRPD 440
>Z47812-5|CAA87792.1| 980|Caenorhabditis elegans Hypothetical
protein T05H10.5a protein.
Length = 980
Score = 46.4 bits (105), Expect = 4e-06
Identities = 26/93 (27%), Positives = 43/93 (46%)
Frame = +1
Query: 34 AREPFLNYFAAILQRNERRAQLQTDERTLAGDGFMLNVCSVLQLLSVRIKLERVYPLYTF 213
+R L + A I+ N+ R + D + D +M N SV+ + S +I L ++ Y F
Sbjct: 344 SRNKTLRWIATIISTNDIRTRSHYDPSDVLCDHYMTNFLSVMYMFSEKIDLSKIIVDYPF 403
Query: 214 QPDSWANVRDETRLYFTAQEAQDWLDELNNDPN 312
P S N+ ETRL A + + + P+
Sbjct: 404 LPSSLINISKETRLKMDESGAVAFASQFADRPD 436
>Z47812-10|CAH04720.1| 979|Caenorhabditis elegans Hypothetical
protein T05H10.5c protein.
Length = 979
Score = 46.0 bits (104), Expect = 6e-06
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +1
Query: 34 AREPFLNYFAAILQRNERRAQLQTDERTLAGDGFMLNVCSVLQLLSVRIKLERVYPLYTF 213
+R L + A I+ N+ R + D + D +M N SV+ + S +I L ++ Y F
Sbjct: 344 SRNKTLRWIATIISTNDIRTRSHYDPSDVLCDHYMTNFLSVMYMFSEKIDLSKIIVDYPF 403
Query: 214 QPDSWANVRDETRL 255
P S N+ ETRL
Sbjct: 404 LPSSLINISKETRL 417
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 29.9 bits (64), Expect = 0.41
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 143 TCVRCYNCCPSALSWSACTRC-TLSNRTRGRTSATRLDCTSPRKRPRTGSMNSITIRT 313
TC CY PS+ AC C +S T TS L T P PR M+ + T
Sbjct: 134 TCQSCYQMTPSSYDRRACKLCGAVSTATANFTSQMYLSPTLP-SPPRGALMSDCSTPT 190
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 29.9 bits (64), Expect = 0.41
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 143 TCVRCYNCCPSALSWSACTRC-TLSNRTRGRTSATRLDCTSPRKRPRTGSMNSITIRT 313
TC CY PS+ AC C +S T TS L T P PR M+ + T
Sbjct: 134 TCQSCYQMTPSSYDRRACKLCGAVSTATANFTSQMYLSPTLP-SPPRGALMSDCSTPT 190
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 29.9 bits (64), Expect = 0.41
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 143 TCVRCYNCCPSALSWSACTRC-TLSNRTRGRTSATRLDCTSPRKRPRTGSMNSITIRT 313
TC CY PS+ AC C +S T TS L T P PR M+ + T
Sbjct: 134 TCQSCYQMTPSSYDRRACKLCGAVSTATANFTSQMYLSPTLP-SPPRGALMSDCSTPT 190
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 29.9 bits (64), Expect = 0.41
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 143 TCVRCYNCCPSALSWSACTRC-TLSNRTRGRTSATRLDCTSPRKRPRTGSMNSITIRT 313
TC CY PS+ AC C +S T TS L T P PR M+ + T
Sbjct: 134 TCQSCYQMTPSSYDRRACKLCGAVSTATANFTSQMYLSPTLP-SPPRGALMSDCSTPT 190
>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform a protein.
Length = 1117
Score = 29.1 bits (62), Expect = 0.73
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 155 CYNCCPSALSWSACTRCT-LSNRTRGRTSATRLDCTSPRKRPRTGSMNSITIRTT 316
C +C +++S A + C L+ R + CT P RP N+IT +T
Sbjct: 304 CKSCPSNSISSEAASSCRCLNGYFRAEDELISMPCTQPPSRPIKLVANAITATST 358
>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform b protein.
Length = 1122
Score = 29.1 bits (62), Expect = 0.73
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 155 CYNCCPSALSWSACTRCT-LSNRTRGRTSATRLDCTSPRKRPRTGSMNSITIRTT 316
C +C +++S A + C L+ R + CT P RP N+IT +T
Sbjct: 304 CKSCPSNSISSEAASSCRCLNGYFRAEDELISMPCTQPPSRPIKLVANAITATST 358
>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
tyrosine kinase protein.
Length = 1122
Score = 29.1 bits (62), Expect = 0.73
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 155 CYNCCPSALSWSACTRCT-LSNRTRGRTSATRLDCTSPRKRPRTGSMNSITIRTT 316
C +C +++S A + C L+ R + CT P RP N+IT +T
Sbjct: 304 CKSCPSNSISSEAASSCRCLNGYFRAEDELISMPCTQPPSRPIKLVANAITATST 358
>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical protein
K06C4.15 protein.
Length = 1067
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 17 SWSVPRLGSLS*TISRPYCSEMNDAHNCRLMNVRSLAMASC 139
+W++P+L L I S + +C++ N+R +SC
Sbjct: 1024 NWTIPKLELLGIEIGSNLASSIVKELSCKVTNIRLFTDSSC 1064
>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical protein
ZC53.4 protein.
Length = 1410
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/32 (25%), Positives = 23/32 (71%)
Frame = +1
Query: 133 FMLNVCSVLQLLSVRIKLERVYPLYTFQPDSW 228
++++ ++LQ L + +KL++++ + TF+ +W
Sbjct: 1308 YVIHYENLLQCLQLGLKLKKIHRIITFKESNW 1339
>U23527-2|AAP40525.1| 300|Caenorhabditis elegans Neuronal igcam
protein 1, isoform b protein.
Length = 300
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 149 VRCYNCCPSALSWSACTRCTLSNRTRGRTSATRLDCTSPRKRP 277
V+ YN S L A T +++ ATR C SP P
Sbjct: 202 VKAYNYPDSLLYSPAGTTSSIAETNSSGNGATRAQCDSPNNAP 244
>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
protein 1, isoform a protein.
Length = 1147
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 149 VRCYNCCPSALSWSACTRCTLSNRTRGRTSATRLDCTSPRKRP 277
V+ YN S L A T +++ ATR C SP P
Sbjct: 1049 VKAYNYPDSLLYSPAGTTSSIAETNSSGNGATRAQCDSPNNAP 1091
>M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 429
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 93 CASFISLQYGREIV*ERLPSLGTDQDI 13
C S +LQ R+I+ LP G DQDI
Sbjct: 61 CTSHSTLQRTRKIIQWELPKRGGDQDI 87
>M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 467
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 93 CASFISLQYGREIV*ERLPSLGTDQDI 13
C S +LQ R+I+ LP G DQDI
Sbjct: 61 CTSHSTLQRTRKIIQWELPKRGGDQDI 87
>L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated
protein 86, isoform b protein.
Length = 467
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 93 CASFISLQYGREIV*ERLPSLGTDQDI 13
C S +LQ R+I+ LP G DQDI
Sbjct: 61 CTSHSTLQRTRKIIQWELPKRGGDQDI 87
>L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated
protein 86, isoform a protein.
Length = 429
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 93 CASFISLQYGREIV*ERLPSLGTDQDI 13
C S +LQ R+I+ LP G DQDI
Sbjct: 61 CTSHSTLQRTRKIIQWELPKRGGDQDI 87
>AF016679-6|AAB66156.1| 490|Caenorhabditis elegans Hypothetical
protein T28C12.1 protein.
Length = 490
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 130 GFMLNVCSVLQLLSVRIKLERVYPLYTFQPDSWANV 237
GF+LN+ +++ L V I L +Y F +S+A +
Sbjct: 200 GFILNMYTIVSYLMVLICLSACLVVYLFFKESYAGI 235
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 137 C*TCVRCYNCCPSALSWSACTRC 205
C C RC CC + CT C
Sbjct: 94 CCCCRRCCTCCRTCCCTRCCTCC 116
>Z77658-1|CAB01158.1| 98|Caenorhabditis elegans Hypothetical
protein F14D7.1 protein.
Length = 98
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 20 WSVPRLGSLS*TISRPYCSEMNDAHNCRLMNVRSLAMASC*TCV-RCYNCCPSAL 181
W V +LG+ ++ + C E+ H LM V +L + S + R NCC + L
Sbjct: 27 WKVSKLGAHKSSLEKQLCEELKKNHE-DLMYVCNLLIVSEDSHFHRVENCCIATL 80
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 137 C*TCVRCYNCCPSALSWSACTRC 205
C C RC CC + CT C
Sbjct: 92 CCCCRRCCTCCRTCCCTRCCTCC 114
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 137 C*TCVRCYNCCPSALSWSACTRC 205
C C RC CC + CT C
Sbjct: 93 CCCCRRCCTCCRTCCCTRCCTCC 115
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 137 C*TCVRCYNCCPSALSWSACTRC 205
C C RC CC + CT C
Sbjct: 93 CCCCRRCCTCCRTCCCTRCCTCC 115
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 137 C*TCVRCYNCCPSALSWSACTRC 205
C C RC CC + CT C
Sbjct: 94 CCCCRRCCTCCRTCCCTRCCTCC 116
>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long isoform
protein.
Length = 1187
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -3
Query: 130 HRQRAYVHQSAVVRVVHFAAVWPRNSLGKAP 38
HRQ+ Y+H+ + + +VW G+ P
Sbjct: 972 HRQKHYLHEKSEPDTGYKVSVWAETRAGEGP 1002
>AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical
protein Y39G8B.7 protein.
Length = 179
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = +2
Query: 155 CYNCCPSALSWSA---CTRCTLSNRTRGRTSA 241
C +C P+ SW+ CT C S + R R A
Sbjct: 117 CKDCSPNCASWAKRGFCTNCCYSCQDRERYCA 148
>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
domain-containingprotein Y54G2A.25 protein.
Length = 1187
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -3
Query: 130 HRQRAYVHQSAVVRVVHFAAVWPRNSLGKAP 38
HRQ+ Y+H+ + + +VW G+ P
Sbjct: 972 HRQKHYLHEKSEPDTGYKVSVWAETRAGEGP 1002
>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
molecule homologprotein 2, isoform a protein.
Length = 1187
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -3
Query: 130 HRQRAYVHQSAVVRVVHFAAVWPRNSLGKAP 38
HRQ+ Y+H+ + + +VW G+ P
Sbjct: 972 HRQKHYLHEKSEPDTGYKVSVWAETRAGEGP 1002
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/66 (22%), Positives = 26/66 (39%)
Frame = +2
Query: 65 PYCSEMNDAHNCRLMNVRSLAMASC*TCVRCYNCCPSALSWSACTRCTLSNRTRGRTSAT 244
P C + ++ C S+ ++S +C C + C SA + C R N +
Sbjct: 67 PICQQQC-SNQCN-QQCTSITISSGPSCSSCQSACSSACTTPTCIRTCQRNSCSNLCNTG 124
Query: 245 RLDCTS 262
CT+
Sbjct: 125 SNSCTN 130
>U61235-1|AAB17540.1| 485|Caenorhabditis elegans ZK protein.
Length = 485
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 7 CHNILVCPEAREPFLNYFAAILQR-NERRAQLQTDERTLAGDGFMLNVCSVL 159
CHN++ FLN+ ++ Q+ L+ A F LN+ VL
Sbjct: 429 CHNVVKANTLSHTFLNFATSVQQKMRSVLGSLEETGHLPATSEFFLNIIDVL 480
>U21308-4|AAB93321.1| 484|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 1 protein.
Length = 484
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 7 CHNILVCPEAREPFLNYFAAILQR-NERRAQLQTDERTLAGDGFMLNVCSVL 159
CHN++ FLN+ ++ Q+ L+ A F LN+ VL
Sbjct: 428 CHNVVKANTLSHTFLNFATSVQQKMRSVLGSLEETGHLPATSEFFLNIIDVL 479
>AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote
defective-1 protein.
Length = 706
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 249 SLVADVRPRVRLESVQRVHALQLNADGQQL*HRTHVQHEAIASERTFI 106
SL A VR L+ VH L+ HR +V H +++ FI
Sbjct: 92 SLQAYVREHGALDDATAVHVLRQLISAVSFMHRVNVIHRDLSAGNVFI 139
>AF040659-9|AAK39391.1| 344|Caenorhabditis elegans Hypothetical
protein ZK484.7 protein.
Length = 344
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 76 RNERRAQLQTDERTLAGDGFMLNVCSVLQLLSVRIKL 186
R +R +QTD++ L +LN C ++ V +KL
Sbjct: 294 REQRNNSIQTDQQYLFVHQVILNYCLDKKMFDVDVKL 330
>AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote
defective: embryonic lethalprotein 1 protein.
Length = 706
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 249 SLVADVRPRVRLESVQRVHALQLNADGQQL*HRTHVQHEAIASERTFI 106
SL A VR L+ VH L+ HR +V H +++ FI
Sbjct: 92 SLQAYVREHGALDDATAVHVLRQLISAVSFMHRVNVIHRDLSAGNVFI 139
>AC006656-3|AAF39882.1| 549|Caenorhabditis elegans Hypothetical
protein H12I13.3 protein.
Length = 549
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 136 MLNVCSVL-QLLSVRIKLERVYPLYTFQPDSW 228
MLN+ L Q L+ +KL++++ + TF+ +W
Sbjct: 285 MLNLIKALIQALNHGLKLKKIHRILTFKESAW 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,096,832
Number of Sequences: 27780
Number of extensions: 129442
Number of successful extensions: 361
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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