Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0578
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   3.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   4.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   4.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   4.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   4.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   4.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   6.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   8.3  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +2

Query: 74  SEMNDAHNCRLMNVRSLAMASC*TCVRCYNCCP 172
           SE  D  N +      L   S    V  Y+CCP
Sbjct: 165 SEQGDVSNYQANGEFDLVNFSARRNVEYYSCCP 197


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 168 VRPH*AGARVPAVHFPTGL 224
           VRPH      P  HF  GL
Sbjct: 42  VRPHWRAFPAPGKHFHIGL 60


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 149 VRCYNCCPSALSWSACTRCTLSNRTR 226
           V C NC P+  + +    CT   R +
Sbjct: 425 VTCTNCGPNPCTHTTTNGCTAELRKK 450


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 149 VRCYNCCPSALSWSACTRCTLSNRTR 226
           V C NC P+  + +    CT   R +
Sbjct: 411 VTCTNCGPNPCTHTTTNGCTAELRKK 436


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 149 VRCYNCCPSALSWSACTRCTLSNRTR 226
           V C NC P+  + +    CT   R +
Sbjct: 445 VTCTNCGPNPCTHTTTNGCTAELRKK 470


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 149 VRCYNCCPSALSWSACTRCTLSNRTR 226
           V C NC P+  + +    CT   R +
Sbjct: 394 VTCTNCGPNPCTHTTTNGCTAELRKK 419


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 193 VYPLYTFQPDSWANVRDETRLYFTAQEAQDWL 288
           +YP     P S + V    +LY+   +  DWL
Sbjct: 549 IYPASMTIPGSNSAVFTNYKLYWRYWQGVDWL 580


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 43   PFLNYFAAILQRNERR 90
            P+L   AAIL  NE+R
Sbjct: 1180 PYLRTAAAILTWNEKR 1195


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = +3

Query: 114 YARWRWLHVERVFGVTIAVR 173
           Y  W W   E   G+T A +
Sbjct: 105 YPDWTWAKNENCSGITSAYK 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,124
Number of Sequences: 438
Number of extensions: 1560
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)