Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0578
(318 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48310.1 68418.m05968 expressed protein 29 0.51
At1g17830.1 68414.m02207 expressed protein 29 0.89
At1g73210.2 68414.m08473 expressed protein 28 1.6
At1g73210.1 68414.m08472 expressed protein 28 1.6
At5g42480.1 68418.m05171 DNAJ plastid division protein (ARC6) al... 27 2.1
At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding protei... 27 2.1
At3g14020.1 68416.m01770 CCAAT-binding transcription factor (CBF... 27 2.7
At5g41080.2 68418.m04994 glycerophosphoryl diester phosphodieste... 26 4.8
At5g41080.1 68418.m04993 glycerophosphoryl diester phosphodieste... 26 4.8
At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containi... 26 4.8
At5g42450.1 68418.m05168 pentatricopeptide (PPR) repeat-containi... 26 6.3
At5g04290.1 68418.m00422 KOW domain-containing transcription fac... 26 6.3
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 26 6.3
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 26 6.3
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 26 6.3
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 26 6.3
At4g31410.2 68417.m04457 expressed protein 26 6.3
At4g31410.1 68417.m04456 expressed protein 26 6.3
At2g36810.1 68415.m04514 expressed protein 26 6.3
At1g56690.1 68414.m06520 pentatricopeptide (PPR) repeat-containi... 26 6.3
At3g61340.1 68416.m06864 F-box family protein contains F-box dom... 25 8.3
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam... 25 8.3
At1g32190.1 68414.m03959 expressed protein 25 8.3
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 29.5 bits (63), Expect = 0.51
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 4 ICHNILVCPEAREPFLNYFAAILQRNERRAQLQTDER-TLAGDGFMLNVCSV 156
+ H+IL PEA+E NY ++ R+ + TDE + +GF+L+ ++
Sbjct: 676 LLHDIL-SPEAQETLKNYLQTAAKKRCRKHMVDTDEYVSCNSEGFLLDSVTI 726
>At1g17830.1 68414.m02207 expressed protein
Length = 337
Score = 28.7 bits (61), Expect = 0.89
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 205 YTFQPDSWANVR--DETRLYFTAQEAQDWLDELNNDPNH 315
Y Q D W N D+ R+ + A WL +LN +H
Sbjct: 288 YKLQGDLWRNQECGDQGRIVYLRSAADSWLKQLNVQDHH 326
>At1g73210.2 68414.m08473 expressed protein
Length = 312
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 205 YTFQPDSWANVR-DETRLYFTAQEAQDWLDELNND 306
Y Q D W D+ RL + A WL +LN D
Sbjct: 266 YKMQGDLWGKTGFDQDRLLYLQSAADSWLKQLNVD 300
>At1g73210.1 68414.m08472 expressed protein
Length = 314
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 205 YTFQPDSWANVR-DETRLYFTAQEAQDWLDELNND 306
Y Q D W D+ RL + A WL +LN D
Sbjct: 268 YKMQGDLWGKTGFDQDRLLYLQSAADSWLKQLNVD 302
>At5g42480.1 68418.m05171 DNAJ plastid division protein (ARC6)
almost identical to dnaJ plastid division protein ARC6
(GI:33436339) [Arabidopsis thaliana];low similarity to
cell division protein Ftn2 [Synechococcus sp. PCC 7942]
GI:16226084; contains Pfam profile PF00226: DnaJ domain
Length = 801
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 297 EFIEPVLGLLRGEVQSSLVADVRPRV--RLESVQRVHALQL 181
EF+E L LL+ E SSL D+R ++ LE + + L+L
Sbjct: 234 EFVEEALKLLQEEGASSLAPDLRAQIDETLEEITPRYVLEL 274
>At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding
protein-related contains Pfam profile PF00026:
Eukaryotic aspartyl protease;b similar to CND41,
chloroplast nucleoid DNA binding protein (GI:2541876)
[Nicotiana tabacum]
Length = 449
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +2
Query: 137 C*TCVRCYNCCPSALSWSACTRCTLSNRTRGRTSATRLDCTSPRKRPRTGSMN 295
C C C N S + S+ T T+S T T A L C S +P S N
Sbjct: 132 CSGCSGCSNASTSFNTNSSSTYSTVSCSTAQCTQARGLTCPSSSPQPSVCSFN 184
>At3g14020.1 68416.m01770 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 308
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 10 HNILVCPEAREPFLN--YFAAILQRNERRAQLQTDERTL 120
HNI PE F+N + AIL+R ERRA+L+ + +
Sbjct: 165 HNI---PENEPIFVNAKQYQAILRRRERRAKLEAQNKLI 200
>At5g41080.2 68418.m04994 glycerophosphoryl diester
phosphodiesterase family protein weak similarity to
SP|P37965 Glycerophosphoryl diester phosphodiesterase
(EC 3.1.4.46) {Bacillus subtilis}; contains Pfam profile
PF03009: Glycerophosphoryl diester phosphodiesterase
family
Length = 358
Score = 26.2 bits (55), Expect = 4.8
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +1
Query: 94 QLQTDERTLAGDGFMLNVC-SVLQLLSVRIKLERVYPLYTFQPDSWANVRDETRLYFTAQ 270
+L+ D++T+ F++++ SVLQ++S K +R +FQPD+ VR E + +
Sbjct: 160 ELKFDDQTVYEREFLVHILRSVLQVVSNYAK-DRPVIFSSFQPDAAKLVR-ELQSTYPVF 217
Query: 271 EAQDWLDELNND 306
D +E++ND
Sbjct: 218 FLTDAGNEIHND 229
>At5g41080.1 68418.m04993 glycerophosphoryl diester
phosphodiesterase family protein weak similarity to
SP|P37965 Glycerophosphoryl diester phosphodiesterase
(EC 3.1.4.46) {Bacillus subtilis}; contains Pfam profile
PF03009: Glycerophosphoryl diester phosphodiesterase
family
Length = 374
Score = 26.2 bits (55), Expect = 4.8
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +1
Query: 94 QLQTDERTLAGDGFMLNVC-SVLQLLSVRIKLERVYPLYTFQPDSWANVRDETRLYFTAQ 270
+L+ D++T+ F++++ SVLQ++S K +R +FQPD+ VR E + +
Sbjct: 176 ELKFDDQTVYEREFLVHILRSVLQVVSNYAK-DRPVIFSSFQPDAAKLVR-ELQSTYPVF 233
Query: 271 EAQDWLDELNND 306
D +E++ND
Sbjct: 234 FLTDAGNEIHND 245
>At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 613
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Frame = -1
Query: 114 TFIS-LQLCASFISLQYGREI 55
TF++ + CAS ++LQYGR++
Sbjct: 233 TFVNAITACASLLNLQYGRQL 253
>At5g42450.1 68418.m05168 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 396
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +1
Query: 97 LQTDERTLAGDGFMLNVCSVLQ----LLSVRIKLERVYPLYTFQPDSWANVRDETRLYFT 264
L+ D R ++ + N S ++ + +R K++ L F SW VRD+ R++
Sbjct: 307 LELDPRDVSSYVMLSNAYSAMENWQNVSLIRRKMKET-GLKRFTGCSWIEVRDQIRVFVN 365
Query: 265 AQEAQDWLDEL 297
A + + DE+
Sbjct: 366 ADKNNELKDEV 376
>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
family protein
Length = 1493
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +1
Query: 130 GFMLNVCSVLQLLSVRIKLERVYPLYTFQPDSWANVRDETRLYFTAQEA 276
G++ V + L+ V +KL+ + ++T + + A VRD + T+ +A
Sbjct: 623 GYLCRVIA-LRYSDVTVKLDSQHKIFTVKSEHLAEVRDRNTVLSTSGDA 670
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/48 (27%), Positives = 18/48 (37%)
Frame = +2
Query: 146 CVRCYNCCPSALSWSACTRCTLSNRTRGRTSATRLDCTSPRKRPRTGS 289
C R CP + CT C S + S++ P + P GS
Sbjct: 317 CSRKRYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGS 364
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/48 (27%), Positives = 18/48 (37%)
Frame = +2
Query: 146 CVRCYNCCPSALSWSACTRCTLSNRTRGRTSATRLDCTSPRKRPRTGS 289
C R CP + CT C S + S++ P + P GS
Sbjct: 317 CSRKRYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGS 364
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/48 (27%), Positives = 18/48 (37%)
Frame = +2
Query: 146 CVRCYNCCPSALSWSACTRCTLSNRTRGRTSATRLDCTSPRKRPRTGS 289
C R CP + CT C S + S++ P + P GS
Sbjct: 317 CSRKRYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGS 364
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/48 (27%), Positives = 18/48 (37%)
Frame = +2
Query: 146 CVRCYNCCPSALSWSACTRCTLSNRTRGRTSATRLDCTSPRKRPRTGS 289
C R CP + CT C S + S++ P + P GS
Sbjct: 317 CSRKRYHCPKQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGS 364
>At4g31410.2 68417.m04457 expressed protein
Length = 308
Score = 25.8 bits (54), Expect = 6.3
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -1
Query: 309 RIVIEFIEPVLGLLRGEVQSSLVADVRPRVRLESVQR-VHALQLNADGQQL*HRTHVQHE 133
+++ E +PV L RGEV LV + R+RL+ +R + G L R H Q E
Sbjct: 92 KVLEESCKPVCPLCRGEVTGWLVVE-EARLRLDEKKRCCEEERCRFMGTYLELRKHAQSE 150
Query: 132 AIASERTFISLQLCASFISLQYGREIV 52
S + I + + Q EI+
Sbjct: 151 HPDSRPSEIDPARKLDWENFQQSSEII 177
>At4g31410.1 68417.m04456 expressed protein
Length = 308
Score = 25.8 bits (54), Expect = 6.3
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -1
Query: 309 RIVIEFIEPVLGLLRGEVQSSLVADVRPRVRLESVQR-VHALQLNADGQQL*HRTHVQHE 133
+++ E +PV L RGEV LV + R+RL+ +R + G L R H Q E
Sbjct: 92 KVLEESCKPVCPLCRGEVTGWLVVE-EARLRLDEKKRCCEEERCRFMGTYLELRKHAQSE 150
Query: 132 AIASERTFISLQLCASFISLQYGREIV 52
S + I + + Q EI+
Sbjct: 151 HPDSRPSEIDPARKLDWENFQQSSEII 177
>At2g36810.1 68415.m04514 expressed protein
Length = 1071
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/51 (21%), Positives = 23/51 (45%)
Frame = +1
Query: 37 REPFLNYFAAILQRNERRAQLQTDERTLAGDGFMLNVCSVLQLLSVRIKLE 189
R+ L+Y ++ R+E ++ L LN C+ L + ++ +E
Sbjct: 581 RDQMLDYILTLMGRDENEGFAESSLEVLHTQALALNACTTLVSVEPKLTIE 631
>At1g56690.1 68414.m06520 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 704
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 102 LQLCASFISLQYGREI 55
L +CA+ SLQYGR++
Sbjct: 338 LSVCATLASLQYGRQV 353
>At3g61340.1 68416.m06864 F-box family protein contains F-box domain
Pfam:PF00646
Length = 410
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 142 NVCSVLQL--LSVRIKLERVYPLYTFQPDSWANVRDETRLYF 261
NVC+ +QL L K E +Y P W NV +ET+L F
Sbjct: 304 NVCTGIQLWVLEDAEKHEWSSHIYVLPPP-WRNVYEETKLCF 344
>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1423
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 161 NCCPSALSWSACTRCTLSN 217
NCC + ACT+C+ N
Sbjct: 1120 NCCVCQRIYGACTKCSYGN 1138
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +2
Query: 134 SC*TCVRCYNCC--PSALSWSACTRCTLSNRTRGRTSATRLDCTSPRKRPRT 283
SC T C++CC PS +S S C + G+ + C K P T
Sbjct: 332 SCPTLKGCFSCCKKPSCVS-SCCCPTFKCSSCFGKPKCPKCSCWKCLKCPDT 382
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,715,989
Number of Sequences: 28952
Number of extensions: 118526
Number of successful extensions: 328
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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