Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0577
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    29   0.59 
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    27   1.8  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   4.1  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    25   7.2  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    25   9.5  

>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 274 HRPNCRRVSSSLVCKR 321
           H P+CRRV +S+VC R
Sbjct: 84  HNPSCRRVPNSIVCVR 99


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 337 PCEEGCACKPDYLKLDDNSACV 272
           P +  C CKP+ + L  NS+C+
Sbjct: 337 PRKGRCFCKPEEIDLSSNSSCI 358


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 463 RHIYRYRLLDIPLYTRIRLC 522
           RHIYR++ +    +T +RLC
Sbjct: 145 RHIYRFKEIPQQNFTHVRLC 164


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 80  NKYFCLPMDELYNILEHFYMRI 145
           ++ + L +DELY+++   YMR+
Sbjct: 507 DRAYSLLLDELYHVIARLYMRL 528


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 483 TIAVNVSPEKIAQIRNVQAKMKSL 412
           TIA  + P    Q+R ++AKMK++
Sbjct: 388 TIAGRMKPADTEQVRKLKAKMKAI 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,227
Number of Sequences: 5004
Number of extensions: 42751
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)